Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACF2JY_RS16270 Genome accession   NZ_CP172966
Coordinates   3123536..3124252 (-) Length   238 a.a.
NCBI ID   WP_046380854.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118536..3129252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS16265 (ACF2JY_16265) hypO 3122731..3123396 (-) 666 WP_029726870.1 NAD(P)H-dependent oxidoreductase -
  ACF2JY_RS16270 (ACF2JY_16270) treR 3123536..3124252 (-) 717 WP_046380854.1 trehalose operon repressor Regulator
  ACF2JY_RS16275 (ACF2JY_16275) treC 3124273..3125961 (-) 1689 WP_046380853.1 alpha,alpha-phosphotrehalase -
  ACF2JY_RS16280 (ACF2JY_16280) treP 3126031..3127443 (-) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  ACF2JY_RS16285 (ACF2JY_16285) - 3127632..3127808 (+) 177 Protein_3202 spore germination protein -
  ACF2JY_RS16290 (ACF2JY_16290) - 3127944..3128024 (+) 81 Protein_3203 spore germination protein -
  ACF2JY_RS16295 (ACF2JY_16295) - 3128073..3128345 (+) 273 Protein_3204 spore gernimation protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.83 Da        Isoelectric Point: 7.1737

>NTDB_id=956175 ACF2JY_RS16270 WP_046380854.1 3123536..3124252(-) (treR) [Bacillus subtilis strain cel]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=956175 ACF2JY_RS16270 WP_046380854.1 3123536..3124252(-) (treR) [Bacillus subtilis strain cel]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATTCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTAGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42