Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACF2JY_RS13770 Genome accession   NZ_CP172966
Coordinates   2659924..2661060 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2654924..2666060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS13730 (ACF2JY_13730) xre 2655274..2655615 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  ACF2JY_RS13735 (ACF2JY_13735) xkdA 2655778..2656374 (+) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  ACF2JY_RS13740 (ACF2JY_13740) xpdC 2656410..2657246 (-) 837 WP_046380955.1 manganese catalase family protein -
  ACF2JY_RS13745 (ACF2JY_13745) pghB 2657323..2657925 (-) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  ACF2JY_RS13750 (ACF2JY_13750) yjqA 2658030..2658407 (+) 378 WP_014476529.1 PH domain-containing protein -
  ACF2JY_RS13755 (ACF2JY_13755) xlyB 2658447..2659400 (-) 954 WP_046380954.1 N-acetylmuramoyl-L-alanine amidase -
  ACF2JY_RS13760 (ACF2JY_13760) yjpA 2659528..2659770 (+) 243 WP_046380953.1 YciI family protein -
  ACF2JY_RS13765 (ACF2JY_13765) phrA 2659800..2659934 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ACF2JY_RS13770 (ACF2JY_13770) rapC 2659924..2661060 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ACF2JY_RS13775 (ACF2JY_13775) yjoB 2661206..2662477 (-) 1272 WP_003245490.1 ATPase YjoB -
  ACF2JY_RS13780 (ACF2JY_13780) bstD 2662626..2663090 (+) 465 WP_014479541.1 DinB family protein -
  ACF2JY_RS13785 (ACF2JY_13785) yjnA 2663314..2664078 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ACF2JY_RS13790 (ACF2JY_13790) uxaA 2664117..2665610 (-) 1494 WP_019712454.1 UxaA family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=956150 ACF2JY_RS13770 WP_015252291.1 2659924..2661060(-) (rapC) [Bacillus subtilis strain cel]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=956150 ACF2JY_RS13770 WP_015252291.1 2659924..2661060(-) (rapC) [Bacillus subtilis strain cel]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418