Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   Q6225_RS19120 Genome accession   NZ_CP148901
Coordinates   749300..750481 (-) Length   393 a.a.
NCBI ID   WP_104976140.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain I1B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 744300..755481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6225_RS19105 (Q6225_19100) - 745532..746080 (+) 549 WP_104976142.1 GNAT family N-acetyltransferase -
  Q6225_RS19110 (Q6225_19105) - 746170..746787 (-) 618 WP_104976141.1 HAD family phosphatase -
  Q6225_RS19115 (Q6225_19110) cqsS 747151..749196 (+) 2046 WP_064369289.1 hybrid sensor histidine kinase/response regulator Regulator
  Q6225_RS19120 (Q6225_19115) cqsA 749300..750481 (-) 1182 WP_104976140.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  Q6225_RS19125 (Q6225_19120) ylqF 750818..751762 (-) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43624.88 Da        Isoelectric Point: 6.3840

>NTDB_id=956147 Q6225_RS19120 WP_104976140.1 749300..750481(-) (cqsA) [Vibrio alginolyticus strain I1B]
MSETIQSKPLPSFIEERLDFYIQDLIEPNENKKHLVLGKRPPCNAVVLQSNDYLALSHNKEIQSAHRDAISQHDDNVVMS
AIFLQDDESKPVFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTS
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGILQGLGLTHKVDFITVSLAK
TFAYRAGAILGPEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIRKSDDKRDILFERAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVYGAVFCRPATGRNKNIIRFSVNADMTAAEVDHVLTVCQQAFAHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=956147 Q6225_RS19120 WP_104976140.1 749300..750481(-) (cqsA) [Vibrio alginolyticus strain I1B]
ATGAGTGAAACTATACAAAGCAAACCACTTCCCTCCTTTATCGAGGAACGCCTAGATTTTTATATTCAAGATCTAATCGA
ACCGAATGAGAACAAAAAACACCTTGTTCTTGGTAAACGCCCACCGTGTAATGCCGTTGTCCTGCAAAGCAATGATTACC
TTGCACTGTCTCATAACAAGGAGATTCAAAGTGCGCATCGTGATGCGATTTCCCAGCACGATGACAACGTCGTGATGTCC
GCGATTTTCTTACAAGACGATGAATCGAAACCTGTATTTGAAACGCAACTAGCCAGTTTCGTTGGTATGCCTAGTTGTCT
ACTTTCTCAATCTGGTTGGGCTGCGAATGTCGGTTTATTGCAGACTATTTGTGCACCGAACATACCTGTGTACATTGATT
TCTTTGCACATATGTCTTTGTGGGAAGGCGCACGTATTGCCGGAGCACAAATTCATCCGTTCATGCATAACAACACCAGC
CACCTAAGAAAACAGATTTCACGTCACGGTTCAGGGATCATTGTCGTGGATTCGGTTTACAGCACTATCGGGACCATCGC
TCCTCTACGTGATATCTACGAAATAGCACAGGAGTTTGACTGCGGCCTGGTTGTAGATGAATCACACTCTTTAGGTACAC
ACGGTCCACAAGGTGCGGGGATACTGCAGGGTCTTGGCTTAACTCATAAGGTAGATTTTATTACCGTTAGTCTTGCCAAG
ACATTTGCTTATCGTGCTGGCGCGATTTTAGGCCCAGAAAAACTGGCGAAGACGCTTCCATTTGTGGCGTACCCTGCAAT
ATTTAGTTCTACCGTATTACCGCAAGAGATCATTCGGCTAGAGAAAACACTGGACGTTATAAGAAAATCAGATGATAAGC
GAGACATTCTGTTTGAAAGAGCCAAGTCTTTAGCCGTTGGTTTAAAACGCATTGGATTTACTATTCGCAGTGAATCACAA
ATTATCGCATTAGAATGCGGCAACGAGAGAAACACTGAGCGAGTCCGCGATTTTCTCGAAGAGCGAAATGTTTACGGCGC
AGTGTTTTGCCGCCCTGCAACTGGAAGGAACAAAAACATCATCCGTTTTTCAGTCAATGCCGACATGACAGCTGCTGAAG
TTGATCATGTACTCACTGTCTGCCAACAAGCATTCGCACACCCTGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.623

98.473

0.567