Detailed information NTG0956132

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: Q6225_RS13510
• Genome accession: NZ_CP148900
• Coordinates: 2899417..2900403 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain I1B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2894417..2905403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q6225_RS13495 (Q6225_13490)	recA	2894962..2896005 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
Q6225_RS13500 (Q6225_13495)	pncC	2896206..2896688 (-)	483	WP_005383794.1	nicotinamide-nucleotide amidase	-
Q6225_RS13505 (Q6225_13500)	mutS	2896773..2899334 (+)	2562	WP_104975585.1	DNA mismatch repair protein MutS	-
Q6225_RS13510 (Q6225_13505)	rpoS	2899417..2900403 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
Q6225_RS13515 (Q6225_13510)	-	2900484..2901405 (-)	922	Protein_2610	peptidoglycan DD-metalloendopeptidase family protein	-
Q6225_RS13520 (Q6225_13515)	-	2901419..2902045 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
Q6225_RS13525 (Q6225_13520)	surE	2902045..2902821 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
Q6225_RS13530 (Q6225_13525)	truD	2902821..2903864 (-)	1044	WP_104975586.1	tRNA pseudouridine(13) synthase TruD	-
Q6225_RS13535 (Q6225_13530)	ispF	2903910..2904386 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
Q6225_RS13540 (Q6225_13535)	ispD	2904401..2905108 (-)	708	WP_017633548.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
Q6225_RS13545 (Q6225_13540)	ftsB	2905110..2905391 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=956132 Q6225_RS13510 WP_005380887.1 2899417..2900403(-) (rpoS) [Vibrio alginolyticus strain I1B]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=956132 Q6225_RS13510 WP_005380887.1 2899417..2900403(-) (rpoS) [Vibrio alginolyticus strain I1B]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTATTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854