Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q6225_RS11355 Genome accession   NZ_CP148900
Coordinates   2431355..2432761 (-) Length   468 a.a.
NCBI ID   WP_169644366.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain I1B     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426355..2437761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6225_RS11320 (Q6225_11315) moaE 2426861..2427316 (-) 456 WP_005380781.1 molybdopterin synthase catalytic subunit MoaE -
  Q6225_RS11325 (Q6225_11320) moaD 2427335..2427574 (-) 240 Protein_2186 molybdopterin synthase sulfur carrier subunit -
  Q6225_RS11330 (Q6225_11325) moaC 2427571..2428050 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  Q6225_RS11335 (Q6225_11330) moaB 2428077..2428589 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  Q6225_RS11340 (Q6225_11335) moaA 2428691..2429680 (-) 990 WP_005380776.1 GTP 3',8-cyclase MoaA -
  Q6225_RS11345 (Q6225_11340) - 2429979..2430875 (+) 897 WP_005388931.1 YvcK family protein -
  Q6225_RS11350 (Q6225_11345) luxU 2431014..2431358 (-) 345 WP_104975499.1 quorum-sensing phosphorelay protein LuxU -
  Q6225_RS11355 (Q6225_11350) luxO 2431355..2432761 (-) 1407 WP_169644366.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  Q6225_RS11360 (Q6225_11355) uvrB 2433053..2435083 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52151.75 Da        Isoelectric Point: 6.2547

>NTDB_id=956123 Q6225_RS11355 WP_169644366.1 2431355..2432761(-) (luxO) [Vibrio alginolyticus strain I1B]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNNYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVTKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=956123 Q6225_RS11355 WP_169644366.1 2431355..2432761(-) (luxO) [Vibrio alginolyticus strain I1B]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTACCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATCTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACCAAACTAAAAA
ATGAAGCCGATAATCCAGGTAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCGGCGAGCAGTAAAGCGAGTATTTTTATCACAGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTAAAAGGGGCCTTTACTGGTGCTGCGAATGATCGTCAAGGTGCTGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAACTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGACTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829