Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   Q6225_RS08195 Genome accession   NZ_CP148900
Coordinates   1782125..1783651 (-) Length   508 a.a.
NCBI ID   WP_104975306.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain I1B     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1777125..1788651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6225_RS08175 (Q6225_08175) - 1777144..1778574 (-) 1431 WP_169644504.1 lipopolysaccharide biosynthesis protein -
  Q6225_RS08180 (Q6225_08180) - 1778567..1779739 (-) 1173 WP_104975303.1 glycosyltransferase -
  Q6225_RS08185 (Q6225_08185) - 1779751..1780935 (-) 1185 WP_104975304.1 glycosyltransferase -
  Q6225_RS08190 (Q6225_08190) - 1781080..1782150 (-) 1071 WP_104975305.1 glycosyltransferase family 4 protein -
  Q6225_RS08195 (Q6225_08195) luxO 1782125..1783651 (-) 1527 WP_104975306.1 sigma-54 dependent transcriptional regulator Regulator
  Q6225_RS08200 (Q6225_08200) - 1783960..1784340 (-) 381 WP_005377636.1 Hpt domain-containing protein -
  Q6225_RS08205 (Q6225_08205) - 1784352..1785038 (-) 687 WP_005377635.1 AAA family ATPase -
  Q6225_RS08210 (Q6225_08210) - 1785038..1787140 (-) 2103 WP_104975307.1 SLBB domain-containing protein -
  Q6225_RS08215 (Q6225_08215) - 1787137..1788003 (-) 867 WP_005377631.1 OmpA family protein -
  Q6225_RS08220 (Q6225_08220) - 1788030..1788350 (-) 321 WP_017634929.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56627.53 Da        Isoelectric Point: 5.9083

>NTDB_id=956121 Q6225_RS08195 WP_104975306.1 1782125..1783651(-) (luxO) [Vibrio alginolyticus strain I1B]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHTIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVSHLPAQLTKKSKVTKTTTPA
HVAQESTNIAPITPPPVYTEEPSPSAVEPLITAAEQPGTPSSAATSPYFNADGTIRPMWQVEREAIQNAIAYCDGNVLNA
AVMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=956121 Q6225_RS08195 WP_104975306.1 1782125..1783651(-) (luxO) [Vibrio alginolyticus strain I1B]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTATGTTAAAGACGAACCTTA
TGACATTTTTCATGTCGAGACAGGTCGCGAAGCGATTCAATTTATTGAAAGAAGCAAACCTCAGCTCATCATTCTCGATT
TGAAACTGCCCGACATGTCTGGCGAAGACGTGCTGGATTGGATCAACCAGAATGACATTCCTACGTCCGTTATTATTGCT
ACGGCACACGGCAGCGTCGACTTAGCCGTTAATCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAGCCCATAAACGC
TGATCGCCTAAAAACGTCAGTTGCATTGCACCTTAAACGCGCCAAATTGGAAGATTTGGTGGAAAATATTCAGTCCAAGT
TTGATCGCCACAACTATCACGGATTCATCGGTTCAAGTCTCCCGATGCAGGCGGTATACAAGACCATTGATGCTGTTGCG
CCAACTTCTGCCAGTGTGTTTATTGTGGGAGAAAGCGGCACAGGTAAAGAAGTTTGTGCTGAAGCCGTCCACCGCCAGAG
CGACCGTAAAGACAAGCCTTTTATTGCAATTAACTGTGGGGCTATTCCACGAGATTTGATGGAAAGTGAGATTTTTGGTC
ACGTTAAAGGGGCCTTTACTGGAGCAACAACAGATCGAAAAGGTGCGGCGACGCTGGCACATGGTGGCACGCTTTTTCTT
GATGAGCTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGCTTTCTACAAACGGGCACTTACACCCCTCTTGG
TGGCACTCGAGAAATGAAAGTGGATGTGAGAATCATTTGTGCCACTAACCGAGATCCATTAACAGAAGTAGAAGAAGGTC
GTTTTCGTGAAGACTTATACTACCGTGTGCACGTTATACCTATCGATATGCCCCCATTACGTGAACGAGGAAGTGACATC
GTCACGCTTGCCAAGCACTTCTTGACCACTTACGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGTGAAGCTCA
ACATACCATCAAGCATTACGAATGGCCGGGTAATGTAAGGCAACTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ACGACGAAAAAGTCACGGTGAGCCACCTACCCGCTCAACTTACTAAAAAGTCTAAAGTGACGAAAACAACGACGCCTGCG
CATGTTGCTCAAGAGTCAACAAACATTGCACCAATCACACCACCACCTGTTTATACTGAGGAACCTTCACCTTCTGCGGT
CGAACCTTTGATTACCGCAGCGGAGCAGCCTGGTACACCGTCCTCTGCTGCTACCTCACCGTACTTTAACGCTGATGGAA
CCATTCGCCCTATGTGGCAAGTAGAGCGTGAAGCAATTCAAAACGCAATTGCGTACTGTGATGGCAACGTCCTCAACGCC
GCTGTCATGCTGGAGTTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCGTGGGAAGCGGATGAAATTAATCTCGAACA
ATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(458-494)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.899

97.047

0.484