Detailed information NTG0956112

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: Q6225_RS02100
• Genome accession: NZ_CP148900
• Coordinates: 438351..439379 (-)
• Length: 342 a.a.
• NCBI ID: WP_257978021.1
• Uniprot ID: -
• Organism: Vibrio alginolyticus strain I1B
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 433351..444379

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q6225_RS02070 (Q6225_02070)	-	433865..434296 (-)	432	WP_017633432.1	DUF2787 family protein	-
Q6225_RS02075 (Q6225_02075)	radC	434293..434766 (-)	474	WP_064353570.1	DNA repair protein RadC	-
Q6225_RS02080 (Q6225_02080)	-	435170..435394 (+)	225	WP_064353571.1	hypothetical protein	-
Q6225_RS02085 (Q6225_02085)	hslU	435558..436889 (-)	1332	WP_025768349.1	HslU--HslV peptidase ATPase subunit	-
Q6225_RS02090 (Q6225_02090)	hslV	436913..437464 (-)	552	WP_005383176.1	ATP-dependent protease subunit HslV	-
Q6225_RS02095 (Q6225_02095)	ftsN	437580..438128 (-)	549	WP_025998522.1	cell division protein FtsN	-
Q6225_RS02100 (Q6225_02100)	cytR	438351..439379 (-)	1029	WP_257978021.1	DNA-binding transcriptional regulator CytR	Regulator
Q6225_RS02105 (Q6225_02105)	priA	439682..441886 (-)	2205	WP_315874279.1	primosomal protein N'	-
Q6225_RS02110 (Q6225_02110)	rpmE	442183..442404 (+)	222	WP_005379546.1	50S ribosomal protein L31	-
Q6225_RS02115 (Q6225_02115)	tnpA	442579..443013 (+)	435	WP_017633711.1	IS200/IS605 family transposase	-
Q6225_RS02120 (Q6225_02120)	rpsJ	443474..443785 (+)	312	WP_004410492.1	30S ribosomal protein S10	-

Sequence

Protein

• Length: 342 a.a.
• Molecular weight: 37710.38 Da
• Isoelectric Point: 6.2471

>NTDB_id=956112 Q6225_RS02100 WP_257978021.1 438351..439379(-) (cytR) [Vibrio alginolyticus strain I1B]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKSIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide

• Length: 1029 bp

>NTDB_id=956112 Q6225_RS02100 WP_257978021.1 438351..439379(-) (cytR) [Vibrio alginolyticus strain I1B]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAGGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGAAGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTTCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAATCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTT
CCGACAGTACATATTGACAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAAAGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAATTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAGCCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTCCCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CTATCTCTCAGCCTCGCTATGAGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (175-335)

• Bacterial regulatory proteins, lacI family (LacI) (10-55)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	97.345	99.123	0.965
cytR	Vibrio cholerae C6706	89.521	97.661	0.874