Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACF2JY_RS05005 Genome accession   NZ_CP172966
Coordinates   977913..978623 (+) Length   236 a.a.
NCBI ID   WP_046381268.1    Uniprot ID   -
Organism   Bacillus subtilis strain cel     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 972913..983623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS04985 (ACF2JY_04985) ytfP 973393..974655 (-) 1263 WP_082098094.1 NAD(P)/FAD-dependent oxidoreductase -
  ACF2JY_RS04990 (ACF2JY_04990) murJ 974858..976492 (+) 1635 WP_046381269.1 lipid II flippase MurJ -
  ACF2JY_RS04995 (ACF2JY_04995) rsuA 976561..977280 (+) 720 WP_003229226.1 pseudouridine synthase -
  ACF2JY_RS05000 (ACF2JY_05000) ytzE 977401..977622 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ACF2JY_RS05005 (ACF2JY_05005) pptA 977913..978623 (+) 711 WP_046381268.1 ABC transporter ATP-binding protein Regulator
  ACF2JY_RS05010 (ACF2JY_05010) ythQ 978620..979777 (+) 1158 WP_046381267.1 ABC transporter permease -
  ACF2JY_RS05015 (ACF2JY_05015) pbuO 979817..981115 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  ACF2JY_RS05020 (ACF2JY_05020) pepV 981212..982603 (+) 1392 WP_004399126.1 dipeptidase PepV -
  ACF2JY_RS05025 (ACF2JY_05025) cysK 982637..983572 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26421.45 Da        Isoelectric Point: 5.1555

>NTDB_id=956084 ACF2JY_RS05005 WP_046381268.1 977913..978623(+) (pptA) [Bacillus subtilis strain cel]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDGL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=956084 ACF2JY_RS05005 WP_046381268.1 977913..978623(+) (pptA) [Bacillus subtilis strain cel]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATGGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432