Detailed information NTG0956056

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIJUN_RS29025
• Genome accession: NZ_CP172962
• Coordinates: 6228865..6229869 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain YB1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 6223865..6234869

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIJUN_RS28995 (ACIJUN_29000)	fghA	6223957..6224808 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACIJUN_RS29000 (ACIJUN_29005)	ispF	6224879..6225352 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIJUN_RS29005 (ACIJUN_29010)	truD	6225349..6226416 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
ACIJUN_RS29010 (ACIJUN_29015)	surE	6226404..6227153 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACIJUN_RS29015 (ACIJUN_29020)	-	6227186..6227821 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACIJUN_RS29020 (ACIJUN_29025)	-	6227867..6228760 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACIJUN_RS29025 (ACIJUN_29030)	rpoS	6228865..6229869 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACIJUN_RS29030 (ACIJUN_29035)	fdxA	6230296..6230619 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACIJUN_RS29035 (ACIJUN_29040)	mutS	6230686..6233253 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACIJUN_RS29040 (ACIJUN_29045)	-	6233379..6234386 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=956056 ACIJUN_RS29025 WP_003113871.1 6228865..6229869(+) (rpoS) [Pseudomonas aeruginosa strain YB1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=956056 ACIJUN_RS29025 WP_003113871.1 6228865..6229869(+) (rpoS) [Pseudomonas aeruginosa strain YB1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653