Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAA996_RS04890 Genome accession   NZ_AP028606
Coordinates   956852..958519 (+) Length   555 a.a.
NCBI ID   WP_000923569.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 951852..963519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA996_RS04855 (TKY121773_09680) - 952035..952337 (+) 303 WP_000985090.1 bacteriocin immunity protein -
  AAA996_RS04860 (TKY121773_09690) udk 952445..953083 (+) 639 WP_001181378.1 uridine kinase -
  AAA996_RS04865 (TKY121773_09700) xseA 953211..954551 (+) 1341 WP_000417469.1 exodeoxyribonuclease VII large subunit -
  AAA996_RS04870 (TKY121773_09710) - 954529..954741 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  AAA996_RS04875 (TKY121773_09720) - 954738..955613 (+) 876 WP_000743808.1 polyprenyl synthetase family protein -
  AAA996_RS04880 (TKY121773_09730) - 955606..956421 (+) 816 WP_001041070.1 TlyA family RNA methyltransferase -
  AAA996_RS04885 (TKY121773_09740) - 956414..956845 (+) 432 WP_001034415.1 arginine repressor -
  AAA996_RS04890 (TKY121773_09750) recN 956852..958519 (+) 1668 WP_000923569.1 DNA repair protein RecN Machinery gene
  AAA996_RS04895 (TKY121773_09760) - 958521..959249 (+) 729 WP_000133337.1 metallophosphoesterase -
  AAA996_RS04900 (TKY121773_09770) lepA 959328..961151 (+) 1824 WP_001047204.1 translation elongation factor 4 -
  AAA996_RS04905 - 961244..962550 (-) 1307 Protein_970 transposase -
  AAA996_RS04910 (TKY121773_09800) - 962705..962857 (-) 153 WP_000693357.1 hypothetical protein -
  AAA996_RS04915 (TKY121773_09810) - 963037..963513 (+) 477 WP_000242195.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.23 Da        Isoelectric Point: 4.6211

>NTDB_id=95594 AAA996_RS04890 WP_000923569.1 956852..958519(+) (recN) [Streptococcus pneumoniae strain Sep1]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEADIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=95594 AAA996_RS04890 WP_000923569.1 956852..958519(+) (recN) [Streptococcus pneumoniae strain Sep1]
ATGTTACTTGAAATTTCTATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGACATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTTTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment