Detailed information NTG0955898

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIJQ5_RS05205
• Genome accession: NZ_CP172871
• Coordinates: 1074948..1075940 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081589.1
• Uniprot ID: -
• Organism: Escherichia coli strain 23-AB02114
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1069948..1080940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIJQ5_RS05175 (ACIJQ5_05185)	ispD	1070009..1070719 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACIJQ5_RS05180 (ACIJQ5_05190)	ispF	1070719..1071198 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIJQ5_RS05185 (ACIJQ5_05195)	truD	1071195..1072244 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACIJQ5_RS05190 (ACIJQ5_05200)	surE	1072225..1072986 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACIJQ5_RS05195 (ACIJQ5_05205)	pcm	1072980..1073606 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACIJQ5_RS05200 (ACIJQ5_05210)	nlpD	1073791..1074885 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACIJQ5_RS05205 (ACIJQ5_05215)	rpoS	1074948..1075940 (+)	993	WP_000081589.1	RNA polymerase sigma factor RpoS	Regulator
ACIJQ5_RS05210 (ACIJQ5_05220)	-	1076061..1076468 (-)	408	WP_001208070.1	MarR family winged helix-turn-helix transcriptional regulator	-
ACIJQ5_RS05215 (ACIJQ5_05225)	-	1076615..1077208 (+)	594	WP_000767733.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
ACIJQ5_RS05220 (ACIJQ5_05230)	-	1077208..1078635 (+)	1428	WP_000863214.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
ACIJQ5_RS05225 (ACIJQ5_05235)	-	1078646..1078882 (+)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
ACIJQ5_RS05230 (ACIJQ5_05240)	ygbN	1078922..1080286 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=955898 ACIJQ5_RS05205 WP_000081589.1 1074948..1075940(+) (rpoS) [Escherichia coli strain 23-AB02114]
MSQNTLKVHDLNEDAEFDENGVEVFDEKTLVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=955898 ACIJQ5_RS05205 WP_000081589.1 1074948..1075940(+) (rpoS) [Escherichia coli strain 23-AB02114]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGACCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	71.903	100	0.721