Detailed information NTG0955820

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIIQ4_RS05615
• Genome accession: NZ_CP172867
• Coordinates: 1147117..1148109 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1142117..1153109

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIIQ4_RS05585 (ACIIQ4_05585)	ispD	1142178..1142888 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACIIQ4_RS05590 (ACIIQ4_05590)	ispF	1142888..1143367 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIIQ4_RS05595 (ACIIQ4_05595)	truD	1143364..1144413 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACIIQ4_RS05600 (ACIIQ4_05600)	surE	1144394..1145155 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACIIQ4_RS05605 (ACIIQ4_05605)	pcm	1145149..1145775 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACIIQ4_RS05610 (ACIIQ4_05610)	nlpD	1145960..1147054 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACIIQ4_RS05615 (ACIIQ4_05615)	rpoS	1147117..1148109 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACIIQ4_RS05620 (ACIIQ4_05620)	ygbN	1148203..1149567 (-)	1365	WP_000104441.1	GntP family transporter	-
ACIIQ4_RS05625 (ACIIQ4_05625)	ygbM	1149656..1150432 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACIIQ4_RS05630 (ACIIQ4_05630)	ygbL	1150437..1151075 (-)	639	WP_001278994.1	aldolase	-
ACIIQ4_RS05635 (ACIIQ4_05635)	otnK	1151072..1152334 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=955820 ACIIQ4_RS05615 WP_000081550.1 1147117..1148109(+) (rpoS) [Escherichia coli strain 35]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=955820 ACIIQ4_RS05615 WP_000081550.1 1147117..1148109(+) (rpoS) [Escherichia coli strain 35]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715