Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAA996_RS02665 Genome accession   NZ_AP028606
Coordinates   526479..526745 (+) Length   88 a.a.
NCBI ID   WP_001810535.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521479..531745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA996_RS02645 (TKY121773_05210) - 521734..522243 (+) 510 WP_000619939.1 N-acetyltransferase -
  AAA996_RS02650 (TKY121773_05220) pheT 522320..524725 (+) 2406 WP_061667326.1 phenylalanine--tRNA ligase subunit beta -
  AAA996_RS02655 (TKY121773_05230) - 524793..525794 (-) 1002 WP_000597986.1 endonuclease/exonuclease/phosphatase family protein -
  AAA996_RS02660 - 525950..526353 (+) 404 Protein_523 helix-turn-helix domain-containing protein -
  AAA996_RS02665 (TKY121773_05250) HI0659 526479..526745 (+) 267 WP_001810535.1 helix-turn-helix transcriptional regulator Machinery gene
  AAA996_RS02670 (TKY121773_05260) metE 527006..529255 (+) 2250 WP_000108188.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAA996_RS02675 (TKY121773_05270) metF 529319..530185 (+) 867 WP_000089983.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9608.13 Da        Isoelectric Point: 4.4893

>NTDB_id=95576 AAA996_RS02665 WP_001810535.1 526479..526745(+) (HI0659) [Streptococcus pneumoniae strain Sep1]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=95576 AAA996_RS02665 WP_001810535.1 526479..526745(+) (HI0659) [Streptococcus pneumoniae strain Sep1]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment