Detailed information NTG0955712

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFACP_RS06690
• Genome accession: NZ_CP172860
• Coordinates: 1432722..1433726 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 238627E_ID003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1427722..1438726

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFACP_RS06660 (ACFACP_06660)	fghA	1427814..1428665 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACFACP_RS06665 (ACFACP_06665)	ispF	1428736..1429209 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFACP_RS06670 (ACFACP_06670)	truD	1429206..1430273 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
ACFACP_RS06675 (ACFACP_06675)	surE	1430261..1431010 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFACP_RS06680 (ACFACP_06680)	-	1431043..1431678 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFACP_RS06685 (ACFACP_06685)	-	1431724..1432617 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFACP_RS06690 (ACFACP_06690)	rpoS	1432722..1433726 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFACP_RS06695 (ACFACP_06695)	fdxA	1434153..1434476 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACFACP_RS06700 (ACFACP_06700)	mutS	1434543..1437110 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFACP_RS06705 (ACFACP_06705)	-	1437236..1438243 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=955712 ACFACP_RS06690 WP_003113871.1 1432722..1433726(+) (rpoS) [Pseudomonas aeruginosa strain 238627E_ID003]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=955712 ACFACP_RS06690 WP_003113871.1 1432722..1433726(+) (rpoS) [Pseudomonas aeruginosa strain 238627E_ID003]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653