Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACFELJ_RS27500 Genome accession   NZ_CP172859
Coordinates   5906600..5907196 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 238629E_ID006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5901600..5912196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELJ_RS27480 (ACFELJ_27480) aroK 5902731..5903249 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELJ_RS27485 (ACFELJ_27485) pilQ 5903261..5905405 (-) 2145 WP_400637398.1 type 4a pilus secretin PilQ Machinery gene
  ACFELJ_RS27490 (ACFELJ_27490) comL/pilP 5905459..5905983 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELJ_RS27495 (ACFELJ_27495) pilO 5905980..5906603 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELJ_RS27500 (ACFELJ_27500) pilN 5906600..5907196 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFELJ_RS27505 (ACFELJ_27505) pilM 5907196..5908260 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFELJ_RS27510 (ACFELJ_27510) - 5908445..5910916 (+) 2472 WP_033967771.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=955674 ACFELJ_RS27500 WP_003095839.1 5906600..5907196(-) (pilN) [Pseudomonas aeruginosa strain 238629E_ID006]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=955674 ACFELJ_RS27500 WP_003095839.1 5906600..5907196(-) (pilN) [Pseudomonas aeruginosa strain 238629E_ID006]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAGCTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGGCGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGTGCAGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369