Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACFELJ_RS02145 Genome accession   NZ_CP172859
Coordinates   461770..462135 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 238629E_ID006     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 456770..467135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELJ_RS02115 (ACFELJ_02115) pyrR 457392..457904 (-) 513 WP_033972296.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACFELJ_RS02120 (ACFELJ_02120) ruvX 458016..458450 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACFELJ_RS02125 (ACFELJ_02125) - 458450..459019 (-) 570 WP_400637709.1 YqgE/AlgH family protein -
  ACFELJ_RS02130 (ACFELJ_02130) - 459068..459961 (-) 894 WP_003084580.1 TonB family protein -
  ACFELJ_RS02135 (ACFELJ_02135) gshB 460108..461061 (-) 954 WP_400637711.1 glutathione synthase -
  ACFELJ_RS02140 (ACFELJ_02140) pilG 461316..461723 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACFELJ_RS02145 (ACFELJ_02145) pilH 461770..462135 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACFELJ_RS02150 (ACFELJ_02150) - 462186..462722 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACFELJ_RS02155 (ACFELJ_02155) pilJ 462807..464855 (+) 2049 WP_400637713.1 chemotaxis chemoreceptor PilJ -
  ACFELJ_RS02160 (ACFELJ_02160) pilK 464916..465791 (+) 876 WP_400637715.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=955598 ACFELJ_RS02145 WP_003084587.1 461770..462135(+) (pilH) [Pseudomonas aeruginosa strain 238629E_ID006]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=955598 ACFELJ_RS02145 WP_003084587.1 461770..462135(+) (pilH) [Pseudomonas aeruginosa strain 238629E_ID006]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364