Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAA996_RS00205 Genome accession   NZ_AP028606
Coordinates   38371..39141 (+) Length   256 a.a.
NCBI ID   WP_317640367.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33371..44141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA996_RS00185 (TKY121773_00300) - 35066..35503 (+) 438 WP_000076479.1 CoA-binding protein -
  AAA996_RS00190 (TKY121773_00310) - 35544..36017 (+) 474 WP_115262543.1 hypothetical protein -
  AAA996_RS00195 (TKY121773_00320) - 36046..37056 (-) 1011 WP_000009175.1 YeiH family protein -
  AAA996_RS00200 (TKY121773_00330) - 37205..38374 (+) 1170 WP_000366348.1 pyridoxal phosphate-dependent aminotransferase -
  AAA996_RS00205 (TKY121773_00340) recO 38371..39141 (+) 771 WP_317640367.1 DNA repair protein RecO Machinery gene
  AAA996_RS00210 (TKY121773_00350) plsX 39138..40130 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  AAA996_RS00215 (TKY121773_00360) - 40136..40369 (+) 234 WP_000136447.1 acyl carrier protein -
  AAA996_RS00220 (TKY121773_00370) - 40415..40705 (+) 291 Protein_36 transposase family protein -
  AAA996_RS00225 (TKY121773_00380) blpU 40908..41138 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  AAA996_RS00230 - 41141..41266 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AAA996_RS00235 (TKY121773_00390) comA 41852..44005 (+) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29777.31 Da        Isoelectric Point: 5.8959

>NTDB_id=95557 AAA996_RS00205 WP_317640367.1 38371..39141(+) (recO) [Streptococcus pneumoniae strain Sep1]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCSEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=95557 AAA996_RS00205 WP_317640367.1 38371..39141(+) (recO) [Streptococcus pneumoniae strain Sep1]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTTCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988

Multiple sequence alignment