Detailed information NTG0955564

Bioinformatically predicted

Overview

• Name: radA/sms
• Type: Machinery gene
• Locus tag: ACFELH_RS23970
• Genome accession: NZ_CP172858
• Coordinates: 5135867..5137228 (-)
• Length: 453 a.a.
• NCBI ID: WP_033980212.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 238630E_ID008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5130867..5142228

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELH_RS23945 (ACFELH_23945)	yjiA	5131054..5132058 (-)	1005	WP_033980213.1	GTPase	-
ACFELH_RS23950 (ACFELH_23950)	-	5132118..5132321 (-)	204	WP_003094856.1	YbdD/YjiX family protein	-
ACFELH_RS23955 (ACFELH_23955)	-	5132370..5134436 (-)	2067	WP_003094859.1	carbon starvation CstA family protein	-
ACFELH_RS23960 (ACFELH_23960)	-	5134774..5135280 (-)	507	WP_033887344.1	DUF3015 domain-containing protein	-
ACFELH_RS23965 (ACFELH_23965)	mapZ	5135483..5135860 (+)	378	WP_003094864.1	cyclic di-GMP-binding protein MapZ	-
ACFELH_RS23970 (ACFELH_23970)	radA/sms	5135867..5137228 (-)	1362	WP_033980212.1	DNA repair protein RadA	Machinery gene
ACFELH_RS23975 (ACFELH_23975)	-	5137338..5137772 (+)	435	WP_003104889.1	CopD family protein	-
ACFELH_RS23980 (ACFELH_23980)	-	5137834..5138088 (-)	255	WP_003104887.1	YdcH family protein	-
ACFELH_RS23985 (ACFELH_23985)	-	5138163..5138714 (-)	552	WP_025271364.1	ankyrin repeat domain-containing protein	-
ACFELH_RS23990 (ACFELH_23990)	katB	5138768..5140309 (-)	1542	WP_003094881.1	catalase KatB	-
ACFELH_RS23995 (ACFELH_23995)	-	5140306..5140794 (-)	489	WP_169433242.1	hypothetical protein	-
ACFELH_RS24000 (ACFELH_24000)	mscL	5140837..5141250 (+)	414	WP_003104883.1	large-conductance mechanosensitive channel protein MscL	-
ACFELH_RS24005 (ACFELH_24005)	-	5141355..5142131 (-)	777	WP_003110878.1	ferredoxin--NADP reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48396.78 Da
• Isoelectric Point: 6.8357

>NTDB_id=955564 ACFELH_RS23970 WP_033980212.1 5135867..5137228(-) (radA/sms) [Pseudomonas aeruginosa strain 238630E_ID008]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAGPSGSGRGGWAGQQANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=955564 ACFELH_RS23970 WP_033980212.1 5135867..5137228(-) (radA/sms) [Pseudomonas aeruginosa strain 238630E_ID008]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGGGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
AGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGTGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterProScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (74-219)

• Subunit ChlI of Mg-chelatase (ChlI) (361-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA/sms	Bacillus subtilis subsp. subtilis str. 168	48.238	100	0.483
radA	Streptococcus pneumoniae Rx1	46.288	100	0.468
radA	Streptococcus pneumoniae D39	46.288	100	0.468
radA	Streptococcus pneumoniae R6	46.288	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.468
radA	Streptococcus mitis SK321	46.389	100	0.468
radA	Streptococcus mitis NCTC 12261	46.171	100	0.466