Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHX56_RS23765 Genome accession   NZ_CP148753
Coordinates   5138321..5139682 (-) Length   453 a.a.
NCBI ID   WP_129239372.1    Uniprot ID   -
Organism   Achromobacter veterisilvae strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5133321..5144682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX56_RS23740 (WHX56_23740) - 5133742..5134749 (+) 1008 WP_129239377.1 tripartite tricarboxylate transporter substrate binding protein -
  WHX56_RS23745 (WHX56_23745) - 5134826..5135812 (+) 987 WP_338879171.1 tripartite tricarboxylate transporter substrate binding protein -
  WHX56_RS23750 (WHX56_23750) - 5135915..5136877 (+) 963 WP_287755154.1 2-hydroxyacid dehydrogenase -
  WHX56_RS23755 (WHX56_23755) - 5137040..5137279 (-) 240 WP_129239374.1 hypothetical protein -
  WHX56_RS23760 (WHX56_23760) - 5137452..5138231 (-) 780 WP_287755155.1 sulfite exporter TauE/SafE family protein -
  WHX56_RS23765 (WHX56_23765) radA 5138321..5139682 (-) 1362 WP_129239372.1 DNA repair protein RadA Machinery gene
  WHX56_RS23770 (WHX56_23770) - 5139762..5139896 (-) 135 WP_287755156.1 hypothetical protein -
  WHX56_RS23775 (WHX56_23775) - 5140088..5140714 (+) 627 WP_129239370.1 hypothetical protein -
  WHX56_RS23780 (WHX56_23780) hpaR 5140821..5141285 (+) 465 WP_129239369.1 homoprotocatechuate degradation operon regulator HpaR -
  WHX56_RS23785 (WHX56_23785) hpaD 5141286..5142137 (-) 852 WP_338879172.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  WHX56_RS23790 (WHX56_23790) - 5142359..5143408 (+) 1050 WP_338879173.1 fumarylacetoacetate hydrolase family protein -
  WHX56_RS23795 (WHX56_23795) - 5143425..5144174 (+) 750 WP_129239366.1 fumarylacetoacetate hydrolase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48012.03 Da        Isoelectric Point: 7.1756

>NTDB_id=955480 WHX56_RS23765 WP_129239372.1 5138321..5139682(-) (radA) [Achromobacter veterisilvae strain AB1]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSASAASAHRYAPLASSSPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTSVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=955480 WHX56_RS23765 WP_129239372.1 5138321..5139682(-) (radA) [Achromobacter veterisilvae strain AB1]
ATGGCCAAATCCCGAACCGTATACGTGTGCGCCGATTGCGGCGGCACCACCCCCAAGTGGCAGGGCAAATGCCCGCACTG
CAACGCCTGGAACACGCTCGAAGAGACGGTGGAGTCCTCGGCGTCCGCCGCGTCCGCCCACCGCTACGCGCCGCTGGCCT
CGAGCAGCCCGGTGCGCAGCCTGTCCGAGATCGAGGCCCGCGAAACGCCGCGCCAGCCCACCGGGCTGGATGAATTCGAC
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTCGTGCTGATCGGCGGCGACCCGGGGATAGGCAAGTCGACGCTGCT
GTTGCAGGCGCTGGCGTCCCTGTCCGCGACCACCAGCGTGCTGTACGTCACCGGCGAGGAATCCGCCGAGCAGGTGGCGC
TGCGCGCGCGGCGCCTGGGCCTGCAGACCGGCAACGTCAACCTGCTGGCCGAAATACGGCTGGAAGCCATCCAGGCCGCC
GTGTCCGAGCAGAAACCCACCGTGGCGGTCATCGACTCCATCCAGACGCTGTACAGCGGCGAACTGAGCGCGGCGCCGGG
TTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAGCTTACGCGCCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTGGACACCGTGCTGTATTTCGAGGGC
GACACGCATTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTCTTCGCCAT
GACGGACCGCGGGCTGCGCGGCGTGGCCAATCCGTCGGCCCTGTTCCTGTCGCAGCACGAGCAGCAGGTGGCCGGCTCCT
GCGTGATGGCCACGCAGGAGGGCACCCGGCCGCTGCTGGTGGAAATCCAGGCGCTGGTGGACTCCTCGCACGCGCCCAAC
CCGCGCCGGCTGACCGTCGGCCTGGAAGGCAACCGGCTGGCGATGCTGCTGGCCGTGCTGCACCGGCACGCGGGCGTGTC
CACGTTCGACCAGGACGTTTTCGTCAACGCGGTGGGCGGCGTGCGCATCACGGAGCCGGCGGCCGACCTGCCGGTGCTGC
TGGCCATCATGTCCTCGCTGCGCGACAAGCCGCTGCCGCGCGGCCTGATCGCCTTCGGCGAAGTCGGCCTGGCCGGTGAA
ATCCGGCCCGCGCCGCGCGGGCAGGAACGCCTGCGCGAAGCGGCCAAACTGGGCTTCTCGGTCGCCCTGATCCCGAAGGC
CAACGCGCCGCGCCAGCCCATCGAGGGCCTGGAGATCTGGGCCGTGGACCGGCTGGACGCCGCGCTGGACAAATTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.561

100

0.499
  radA Streptococcus mitis NCTC 12261

46.358

100

0.464
  radA Streptococcus pneumoniae D39

48.592

94.04

0.457
  radA Streptococcus pneumoniae TIGR4

48.592

94.04

0.457
  radA Streptococcus mitis SK321

48.592

94.04

0.457
  radA Streptococcus pneumoniae R6

48.592

94.04

0.457
  radA Streptococcus pneumoniae Rx1

48.592

94.04

0.457