Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   WHX56_RS05480 Genome accession   NZ_CP148753
Coordinates   1173286..1174731 (+) Length   481 a.a.
NCBI ID   WP_287754951.1    Uniprot ID   -
Organism   Achromobacter veterisilvae strain AB1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168286..1179731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX56_RS05465 (WHX56_05465) - 1168966..1170294 (+) 1329 WP_338880673.1 amidase -
  WHX56_RS05470 (WHX56_05470) leuA 1170369..1172081 (-) 1713 WP_129246703.1 2-isopropylmalate synthase -
  WHX56_RS05475 (WHX56_05475) - 1172643..1173287 (-) 645 WP_338880674.1 hypothetical protein -
  WHX56_RS05480 (WHX56_05480) rpoN/rpoN1 1173286..1174731 (+) 1446 WP_287754951.1 RNA polymerase factor sigma-54 Machinery gene
  WHX56_RS05485 (WHX56_05485) - 1174853..1175134 (+) 282 WP_129246697.1 (2Fe-2S)-binding protein -
  WHX56_RS05490 (WHX56_05490) - 1175168..1176025 (-) 858 WP_338880675.1 LysR substrate-binding domain-containing protein -
  WHX56_RS05495 (WHX56_05495) - 1176156..1177070 (+) 915 WP_129246693.1 DMT family transporter -
  WHX56_RS05500 (WHX56_05500) bfr 1177437..1177913 (+) 477 WP_129246691.1 bacterioferritin -
  WHX56_RS05505 (WHX56_05505) - 1177987..1178670 (-) 684 WP_208742467.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52551.87 Da        Isoelectric Point: 4.8139

>NTDB_id=955468 WHX56_RS05480 WP_287754951.1 1173286..1174731(+) (rpoN/rpoN1) [Achromobacter veterisilvae strain AB1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLAENPLLERDDEPLSAQDQADSERESSVQDDET
PVERETAAEEMPGSGGVYPDDDSSLPEAARPDTLREHLMGQLVLTRAAPRDVALAGLLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELKAALSLLQSFDPPGIGARDMAECLLLQLRNPDLGRLPEAADAAALACARRICAEHLSLLATGNTAKLCAA
AGCDEPTFRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRRTRRGWQATLNSAAVPRLQINGLYAQMLGNQKESAHAGL
QSQLQQARWMIRNVEQRFDTILRVAQAIVEHQTAFFSQGPAAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGTGVSTEGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMQKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=955468 WHX56_RS05480 WP_287754951.1 1173286..1174731(+) (rpoN/rpoN1) [Achromobacter veterisilvae strain AB1]
ATGCAAAATATTGTACCTATGACCCGTCCAATTTTAGAACTGCGACCCGGTCAGCATTTGACGCTGACACCACAGTTACA
ACAATCGATCCGATTGTTGCAACTGTCCACGCTCGAACTCGAGGCCGAGATTTCGCAAGTCCTCGCGGAAAACCCGCTGC
TGGAGCGGGACGACGAACCCCTGTCGGCCCAGGACCAGGCCGATTCCGAGCGCGAATCTTCCGTGCAGGACGACGAAACG
CCGGTCGAGCGCGAGACGGCGGCCGAGGAAATGCCAGGATCCGGCGGCGTTTATCCGGACGACGATTCCTCCCTGCCCGA
GGCGGCGCGGCCGGACACGCTGCGCGAACATCTGATGGGCCAACTGGTCCTGACGCGCGCCGCGCCCCGCGACGTCGCGC
TGGCGGGGCTGCTGATCGACGAATTGGACGAAAACGGCTACCTGGGATCGCCGCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAACTGAAGGCGGCGCTGTCGCTGCTGCAATCGTTCGACCCGCCCGGCATCGGCGC
GCGGGACATGGCGGAATGCCTGCTGCTGCAACTGCGCAATCCCGACCTCGGCCGCCTGCCGGAAGCGGCGGACGCCGCCG
CGCTCGCCTGTGCGCGCCGGATCTGCGCGGAGCACCTGTCCTTGCTGGCGACCGGCAACACCGCGAAGCTGTGCGCGGCC
GCGGGCTGCGACGAACCCACGTTCCGGGCGGCCCATGCCCTGATCCTGCGGCTGGAACCCCGGCCGGGACGGGCCTGGAC
CGTGCCCGCGGCCGATTACGCGGTGCCGGACGTCATCGTGCGCAGGACCCGGCGCGGCTGGCAGGCTACTTTGAACAGCG
CCGCCGTGCCCCGGCTGCAGATCAACGGGCTGTACGCCCAGATGCTGGGCAACCAGAAGGAGTCCGCGCACGCCGGCCTG
CAATCGCAACTGCAACAGGCCCGCTGGATGATCCGCAACGTAGAGCAGCGTTTCGACACCATCCTGCGCGTGGCCCAGGC
CATCGTGGAGCACCAGACGGCCTTCTTCAGCCAGGGCCCCGCCGCCATGCGGCCGCTTATCCTGAAGGACATCGCGGGCG
AGCTGGGCTTGCACGAATCCACGATTTCGCGGGCCACGACACAGAAGTACATGCTTACTCCGTTCGGCACCCTGGAGCTC
AAGCGCTTCTTCGGCACGGGCGTGTCGACCGAAGGCGGGGACGCCACGTCGGCCACGGCGGTGCAGACTTTCATCCGGCA
GATGGTGGCGGAAGAGAACCGGGCCAAGCCGCTGTCGGACAGCCAGATCATGCAAAAACTGGCCGATCAGGGGATAGTCA
TCGCCCGCCGGACGGTGGCAAAGTACCGCGAAGCGCTGCGGATCGCCCCGGCCGCGCTGCGCAAGGCACAGGCCGCCGCC
CGCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.298

100

0.526