Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHX55_RS27015 Genome accession   NZ_CP148752
Coordinates   5929594..5930961 (-) Length   455 a.a.
NCBI ID   WP_008004292.1    Uniprot ID   J3G1Q6
Organism   Pseudomonas fluorescens strain AB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5924594..5935961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS26990 (WHX55_26960) - 5924735..5925418 (+) 684 WP_353741612.1 GntR family transcriptional regulator -
  WHX55_RS26995 (WHX55_26965) yjiA 5925521..5926495 (-) 975 WP_353741613.1 GTPase -
  WHX55_RS27000 (WHX55_26970) - 5926658..5926855 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  WHX55_RS27005 (WHX55_26975) - 5926871..5928937 (-) 2067 WP_057713219.1 carbon starvation CstA family protein -
  WHX55_RS27010 (WHX55_26980) - 5929097..5929465 (+) 369 WP_150754990.1 PilZ domain-containing protein -
  WHX55_RS27015 (WHX55_26985) radA 5929594..5930961 (-) 1368 WP_008004292.1 DNA repair protein RadA Machinery gene
  WHX55_RS27020 (WHX55_26990) mscL 5931606..5932019 (+) 414 WP_353741614.1 large-conductance mechanosensitive channel protein MscL -
  WHX55_RS27025 (WHX55_26995) - 5932064..5932840 (-) 777 WP_353741615.1 ferredoxin--NADP reductase -
  WHX55_RS27030 (WHX55_27000) - 5933145..5933858 (+) 714 WP_353741616.1 autoinducer binding domain-containing protein -
  WHX55_RS27035 (WHX55_27005) - 5934034..5935158 (+) 1125 WP_353741617.1 methyltransferase -
  WHX55_RS27040 (WHX55_27010) - 5935223..5935390 (-) 168 WP_353741618.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48675.11 Da        Isoelectric Point: 6.8987

>NTDB_id=955457 WHX55_RS27015 WP_008004292.1 5929594..5930961(-) (radA) [Pseudomonas fluorescens strain AB1]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIEAIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=955457 WHX55_RS27015 WP_008004292.1 5929594..5930961(-) (radA) [Pseudomonas fluorescens strain AB1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAATGGGCCGGCCAGTGCGGTGAGTG
CGGGGCCTGGAACACACTCACCGAAACCATGGTGGAAAGCGGCGGGGCAGCCGCCCCCAGCGGTCGTACCGGGTGGGCCG
GACAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGTGTCGAAGAAATTCCGCGCTTCTCCACCGCCTCCAGCGAGCTC
GACCGGGTTCTGGGTGGTGGTCTGGTGGATGGCTCGGTGGTGCTGATCGGTGGCGACCCTGGCATCGGCAAGTCGACCAT
TCTGTTGCAAACCTTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAGCAAGTGG
CCATGCGTGCGCGGCGCCTGGGGTTGCCTCAGGATCAACTGCGCGTCATGACTGAAACCTGCATCGAAGCCATCATCGCC
ACGGCCCGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTTACCGAGCAACTGCAATCGGCACC
GGGTGGTGTATCCCAGGTGCGTGAAAGCGCGGCATTGCTGGTGCGTTATGCCAAGCAGAGCGGTACGGCGATTTTCCTGG
TGGGCCACGTCACCAAGGAAGGCGCGCTGGCTGGCCCTCGGGTGCTGGAACACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGACGGACGCCTGCGCCTGCTGCGAGCGGTGAAGAACCGTTTCGGTGCAGTCAATGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTTACCCGTGCCCAGGAAGAAGTCCCGGGTA
GCGTGGTGATGGCAACCTGGGAAGGCACGCGGCCGATGCTGGTGGAGGTACAGGCGCTGGTGGACGACAGTCACCTGGCC
AACCCGCGTCGGGTCACACTGGGGCTGGACCAGAACCGGCTGGCGATGTTGCTGGCGGTGCTGCACCGTCACGGTGGCAT
TCCGACCCACGACCAGGACGTGTTTCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACGGCGTCCGACCTGGCGTTGA
TGGCAGCGGTGATGTCCAGTTTGCGCAACCGGCCGTTGCCCCACGATCTGCTGGTGTTCGGTGAGGTCGGGCTTTCCGGT
GAGGTGCGTCCGGTGCCGAGCGGTCAGGAGCGTTTGAAAGAAGCTGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAGGCGCCGGCAGGGTTGCAGATCATTGCTGTCACTCGTCTGGAGCAGGCGTTGGACGCGTTGT
TCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3G1Q6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464