Detailed information NTG0955309

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELE_RS06805
• Genome accession: NZ_CP172856
• Coordinates: 1450302..1451306 (+)
• Length: 334 a.a.
• NCBI ID: WP_109504900.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 238632E_ID011
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1445302..1456306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELE_RS06775 (ACFELE_06775)	fghA	1445394..1446245 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACFELE_RS06780 (ACFELE_06780)	ispF	1446316..1446789 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELE_RS06785 (ACFELE_06785)	truD	1446786..1447853 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
ACFELE_RS06790 (ACFELE_06790)	surE	1447841..1448590 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELE_RS06795 (ACFELE_06795)	-	1448623..1449258 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELE_RS06800 (ACFELE_06800)	-	1449304..1450197 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELE_RS06805 (ACFELE_06805)	rpoS	1450302..1451306 (+)	1005	WP_109504900.1	RNA polymerase sigma factor RpoS	Regulator
ACFELE_RS06810 (ACFELE_06810)	fdxA	1451733..1452056 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ACFELE_RS06815 (ACFELE_06815)	mutS	1452123..1454690 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELE_RS06820 (ACFELE_06820)	-	1454816..1455823 (-)	1008	WP_010793357.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38263.44 Da
• Isoelectric Point: 5.0478

>NTDB_id=955309 ACFELE_RS06805 WP_109504900.1 1450302..1451306(+) (rpoS) [Pseudomonas aeruginosa strain 238632E_ID011]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVVEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=955309 ACFELE_RS06805 WP_109504900.1 1450302..1451306(+) (rpoS) [Pseudomonas aeruginosa strain 238632E_ID011]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGTCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653