Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   WHY35_RS13870 Genome accession   NZ_CP148690
Coordinates   3079347..3080708 (-) Length   453 a.a.
NCBI ID   WP_003479244.1    Uniprot ID   A0A127ELS8
Organism   Clostridium perfringens strain Z1322PCP0180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3074347..3085708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHY35_RS13850 (WHY35_13850) ispD 3075719..3076396 (-) 678 WP_003459324.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  WHY35_RS13855 (WHY35_13855) - 3076410..3077516 (-) 1107 WP_003452256.1 PIN/TRAM domain-containing protein -
  WHY35_RS13860 (WHY35_13860) - 3077828..3078229 (+) 402 WP_003459340.1 hypothetical protein -
  WHY35_RS13865 (WHY35_13865) disA 3078263..3079327 (-) 1065 WP_003452233.1 DNA integrity scanning diadenylate cyclase DisA -
  WHY35_RS13870 (WHY35_13870) radA 3079347..3080708 (-) 1362 WP_003479244.1 DNA repair protein RadA Machinery gene
  WHY35_RS13875 (WHY35_13875) nagB 3080959..3081687 (-) 729 WP_003452236.1 glucosamine-6-phosphate deaminase -
  WHY35_RS13880 (WHY35_13880) - 3081684..3082406 (-) 723 WP_078234223.1 GntR family transcriptional regulator -
  WHY35_RS13885 (WHY35_13885) - 3082606..3082770 (+) 165 WP_003452205.1 hypothetical protein -
  WHY35_RS13890 (WHY35_13890) - 3082864..3083091 (+) 228 WP_003452255.1 glutaredoxin family protein -
  WHY35_RS13895 (WHY35_13895) - 3083214..3084662 (-) 1449 WP_078234224.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  WHY35_RS13900 (WHY35_13900) - 3084679..3084912 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49820.54 Da        Isoelectric Point: 6.5314

>NTDB_id=955208 WHY35_RS13870 WP_003479244.1 3079347..3080708(-) (radA) [Clostridium perfringens strain Z1322PCP0180]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYRETVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=955208 WHY35_RS13870 WP_003479244.1 3079347..3080708(-) (radA) [Clostridium perfringens strain Z1322PCP0180]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGTAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGACTTGTTAAGGGGTCACTTACACTTATATCTGGTGATCCTGGGATAGGTAAATCTACACTTCTTTTACA
GACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGGGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAACAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACTGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTTTTAGAGGACACTAGTTTTAATCAAGAAGGATCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATTCAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAAAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCCATTT
CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127ELS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.501
  radA Streptococcus pneumoniae Rx1

47.577

100

0.477
  radA Streptococcus pneumoniae D39

47.577

100

0.477
  radA Streptococcus pneumoniae R6

47.577

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.477
  radA Streptococcus mitis SK321

47.357

100

0.475
  radA Streptococcus mitis NCTC 12261

47.357

100

0.475