Detailed information NTG0955208

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELK_RS06675
• Genome accession: NZ_CP172855
• Coordinates: 1424454..1425458 (+)
• Length: 334 a.a.
• NCBI ID: WP_121380207.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 238633E_ID012
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1419454..1430458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELK_RS06645 (ACFELK_06645)	fghA	1419546..1420397 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACFELK_RS06650 (ACFELK_06650)	ispF	1420468..1420941 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELK_RS06655 (ACFELK_06655)	truD	1420938..1422005 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ACFELK_RS06660 (ACFELK_06660)	surE	1421993..1422742 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELK_RS06665 (ACFELK_06665)	-	1422775..1423410 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELK_RS06670 (ACFELK_06670)	-	1423456..1424349 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELK_RS06675 (ACFELK_06675)	rpoS	1424454..1425458 (+)	1005	WP_121380207.1	RNA polymerase sigma factor RpoS	Regulator
ACFELK_RS06680 (ACFELK_06680)	fdxA	1425885..1426208 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACFELK_RS06685 (ACFELK_06685)	mutS	1426275..1428842 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELK_RS06690 (ACFELK_06690)	-	1428968..1429975 (-)	1008	WP_019682219.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38205.36 Da
• Isoelectric Point: 5.0478

>NTDB_id=955208 ACFELK_RS06675 WP_121380207.1 1424454..1425458(+) (rpoS) [Pseudomonas aeruginosa strain 238633E_ID012]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATASFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=955208 ACFELK_RS06675 WP_121380207.1 1424454..1425458(+) (rpoS) [Pseudomonas aeruginosa strain 238633E_ID012]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCGCTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653