Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   WHY35_RS02780 Genome accession   NZ_CP148690
Coordinates   652690..654546 (+) Length   618 a.a.
NCBI ID   WP_003455403.1    Uniprot ID   A0A133MRZ7
Organism   Clostridium perfringens strain Z1322PCP0180     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 647690..659546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHY35_RS02765 (WHY35_02765) - 648571..649365 (+) 795 WP_338842541.1 HAD family hydrolase -
  WHY35_RS02770 (WHY35_02770) - 649631..650074 (-) 444 WP_338842542.1 MarR family transcriptional regulator -
  WHY35_RS02775 (WHY35_02775) - 650400..652697 (+) 2298 WP_003471509.1 ABC transporter ATP-binding protein -
  WHY35_RS02780 (WHY35_02780) rcrQ 652690..654546 (+) 1857 WP_003455403.1 ABC transporter ATP-binding protein Regulator
  WHY35_RS02785 (WHY35_02785) - 655063..655944 (+) 882 WP_338842543.1 hypothetical protein -
  WHY35_RS02790 (WHY35_02790) - 656199..657248 (+) 1050 WP_003449992.1 AEC family transporter -
  WHY35_RS02795 (WHY35_02795) - 657576..658574 (+) 999 WP_003455390.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68480.15 Da        Isoelectric Point: 5.9525

>NTDB_id=955196 WHY35_RS02780 WP_003455403.1 652690..654546(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0180]
MSKERKGGMGGPMGRMGGGPRAVEKAKDFKGTMKKLGVYLKPYSLSIAIVILFAIGSAAFSIVGPKILGKATTKIFEGLV
QKITGVPDASIDFGYIGNIAMILVALYLVSSLFGIIQSFIMSGVAQKVSYNLRKQISEKMDTLPLNYFDTRTNGEVLSRI
TNDVDTVNQTLNQSLSQIITSVVTLIGVLIMMFSISWIMTLATFIILPVSMVLISLVVKKSQKYFKSQQEYLGHLNGQVE
EVYGGHNIMKAFNREEASTKDFDELNNTLYKSAWKSQFLSGMMMPIMSFVGNLGYVLVSILGGWLTIKSVITVGDIQAFI
QYVRSFNQPISQMAQVANIMQSTAAAAERVFEFLDEEDEVKDPVNSVDPSEIRGEVEFEDVHFGYNEDKIIINDFSVDVK
PGQKVAIVGPTGAGKTTIVKLLMRFYDINSGSIKIDGHDIRDFKRADLRNLFGMVLQDTWLFNGTIMENLRYGRLDATDA
EVKEAAKAAHVDHFVKTLPDGYNMVLNEEASNISQGQKQLLTIARAFLKDPKLLILDEATSSVDTRTELLIQKAMEKLME
GRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLEKGGFYSSLYNSQFEQSSAS

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=955196 WHY35_RS02780 WP_003455403.1 652690..654546(+) (rcrQ) [Clostridium perfringens strain Z1322PCP0180]
ATGAGTAAAGAAAGAAAAGGCGGAATGGGTGGCCCAATGGGTAGAATGGGCGGAGGCCCAAGAGCCGTTGAAAAAGCAAA
AGATTTTAAAGGAACAATGAAAAAGCTTGGGGTTTATTTAAAACCCTATAGTTTATCTATAGCTATTGTAATATTATTTG
CTATAGGAAGCGCAGCCTTCTCAATAGTAGGACCTAAGATTTTAGGTAAAGCTACTACTAAAATATTTGAAGGTTTAGTT
CAAAAGATAACAGGGGTACCAGATGCTTCTATAGATTTTGGATACATTGGAAATATAGCAATGATTTTAGTAGCTCTATA
CTTAGTAAGTTCATTATTTGGGATTATACAATCTTTTATAATGTCAGGAGTTGCTCAAAAGGTTTCTTATAATTTAAGAA
AACAAATATCAGAAAAAATGGATACTTTACCTCTTAATTATTTTGATACAAGAACAAACGGAGAGGTTTTATCAAGAATT
ACAAATGACGTTGATACAGTGAACCAAACTTTAAATCAAAGTTTATCACAAATAATAACTTCAGTGGTTACTTTAATTGG
GGTATTAATAATGATGTTCTCAATAAGTTGGATTATGACTTTAGCAACATTTATAATACTTCCAGTTTCAATGGTTCTTA
TATCTTTAGTTGTTAAGAAATCTCAAAAATACTTTAAATCTCAACAAGAATACTTAGGTCATCTTAATGGTCAAGTAGAA
GAGGTTTATGGTGGACACAATATAATGAAAGCTTTCAATAGAGAAGAAGCTTCAACTAAAGACTTTGATGAATTAAATAA
CACTTTATATAAATCAGCTTGGAAATCTCAATTCTTATCAGGTATGATGATGCCAATCATGTCTTTTGTAGGAAACTTAG
GATATGTTTTAGTTTCAATACTTGGTGGATGGTTAACAATTAAAAGTGTTATAACAGTTGGGGATATACAAGCATTTATC
CAATATGTACGTTCATTTAACCAACCAATATCTCAAATGGCTCAGGTTGCAAATATAATGCAATCAACAGCGGCTGCTGC
TGAGAGAGTATTTGAATTCTTAGATGAAGAGGATGAGGTTAAAGATCCAGTTAATTCAGTAGATCCTTCAGAAATAAGAG
GAGAAGTTGAATTTGAAGATGTTCATTTTGGATATAATGAAGATAAGATAATAATAAATGATTTTTCAGTAGATGTTAAA
CCAGGGCAAAAGGTTGCTATTGTTGGACCTACAGGAGCAGGTAAAACTACAATAGTTAAATTATTAATGAGATTCTACGA
TATAAATAGTGGAAGTATTAAGATTGATGGTCATGATATAAGAGACTTTAAGCGTGCTGATTTACGTAACTTATTTGGTA
TGGTTCTTCAAGATACATGGTTATTTAATGGAACTATAATGGAGAATTTACGTTATGGAAGACTAGATGCAACTGATGCT
GAAGTTAAAGAGGCTGCTAAGGCTGCCCATGTTGATCATTTCGTAAAAACTTTACCAGATGGATATAATATGGTTTTAAA
TGAAGAAGCAAGTAATATATCACAAGGACAAAAGCAGCTTTTAACAATTGCTAGAGCTTTCTTAAAAGATCCTAAGTTAT
TAATACTTGACGAGGCTACAAGTTCAGTTGATACTCGTACAGAGCTTTTAATACAAAAAGCTATGGAAAAACTTATGGAA
GGAAGAACAAGCTTTATTATAGCTCACAGACTTTCTACTATACGTGATGCAGACTTAATCCTTGTTATGAAGGATGGGGA
TATAGTTGAACAAGGAAACCATGAAGAGCTTCTAGAAAAAGGTGGATTCTATTCAAGCCTTTACAATAGCCAATTTGAAC
AAAGTAGTGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(48-329)

ABC transporter (ABC_tran)

(393-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133MRZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.764

95.307

0.484