Detailed information NTG0954954

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELM_RS22315
• Genome accession: NZ_CP172852
• Coordinates: 4751444..4752448 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 238636E_ID015
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4746444..4757448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELM_RS22300 (ACFELM_22300)	-	4746927..4747934 (+)	1008	WP_003098486.1	TolB family protein	-
ACFELM_RS22305 (ACFELM_22305)	mutS	4748060..4750627 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELM_RS22310 (ACFELM_22310)	fdxA	4750694..4751017 (+)	324	WP_003092272.1	ferredoxin FdxA	-
ACFELM_RS22315 (ACFELM_22315)	rpoS	4751444..4752448 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFELM_RS22320 (ACFELM_22320)	-	4752553..4753446 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELM_RS22325 (ACFELM_22325)	-	4753492..4754127 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELM_RS22330 (ACFELM_22330)	surE	4754160..4754909 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELM_RS22335 (ACFELM_22335)	truD	4754897..4755964 (-)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
ACFELM_RS22340 (ACFELM_22340)	ispF	4755961..4756434 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELM_RS22345 (ACFELM_22345)	fghA	4756505..4757356 (-)	852	WP_023115121.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=954954 ACFELM_RS22315 WP_003113871.1 4751444..4752448(-) (rpoS) [Pseudomonas aeruginosa strain 238636E_ID015]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=954954 ACFELM_RS22315 WP_003113871.1 4751444..4752448(-) (rpoS) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653