Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACFELM_RS19885 Genome accession   NZ_CP172852
Coordinates   4232322..4232651 (-) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 238636E_ID015     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4227322..4237651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELM_RS19870 (ACFELM_19870) uvrB 4228709..4230721 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  ACFELM_RS19875 (ACFELM_19875) - 4230909..4232105 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  ACFELM_RS19885 (ACFELM_19885) comEA/comE1 4232322..4232651 (-) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  ACFELM_RS19890 (ACFELM_19890) - 4232842..4234839 (-) 1998 WP_031633096.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACFELM_RS19895 (ACFELM_19895) - 4234934..4235962 (-) 1029 WP_003116434.1 glycosyltransferase family 4 protein -
  ACFELM_RS19900 (ACFELM_19900) - 4236155..4237360 (-) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=954949 ACFELM_RS19885 WP_023115163.1 4232322..4232651(-) (comEA/comE1) [Pseudomonas aeruginosa strain 238636E_ID015]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=954949 ACFELM_RS19885 WP_023115163.1 4232322..4232651(-) (comEA/comE1) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394