Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACFELM_RS18930 Genome accession   NZ_CP172852
Coordinates   4024625..4024981 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain 238636E_ID015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4019625..4029981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELM_RS18905 (ACFELM_18905) - 4019991..4020623 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  ACFELM_RS18910 (ACFELM_18910) - 4020688..4021584 (-) 897 WP_023115235.1 radical SAM protein -
  ACFELM_RS18915 (ACFELM_18915) - 4021751..4022389 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  ACFELM_RS18920 (ACFELM_18920) - 4022475..4023608 (+) 1134 WP_023115234.1 aminotransferase class V-fold PLP-dependent enzyme -
  ACFELM_RS18925 (ACFELM_18925) - 4023834..4024610 (-) 777 WP_003091117.1 TatD family hydrolase -
  ACFELM_RS18930 (ACFELM_18930) pilZ 4024625..4024981 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  ACFELM_RS18935 (ACFELM_18935) - 4025015..4026001 (-) 987 WP_400518429.1 DNA polymerase III subunit delta' -
  ACFELM_RS18940 (ACFELM_18940) tmk 4025994..4026626 (-) 633 WP_003091125.1 dTMP kinase -
  ACFELM_RS18945 (ACFELM_18945) mltG 4026655..4027704 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  ACFELM_RS18950 (ACFELM_18950) pabC 4027710..4028525 (-) 816 WP_003452483.1 aminodeoxychorismate lyase -
  ACFELM_RS18955 (ACFELM_18955) fabF 4028525..4029769 (-) 1245 WP_023115233.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=954941 ACFELM_RS18930 WP_003091119.1 4024625..4024981(-) (pilZ) [Pseudomonas aeruginosa strain 238636E_ID015]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=954941 ACFELM_RS18930 WP_003091119.1 4024625..4024981(-) (pilZ) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449