Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACFELM_RS02080 Genome accession   NZ_CP172852
Coordinates   444746..445111 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 238636E_ID015     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439746..450111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELM_RS02050 (ACFELM_02050) pyrR 440368..440880 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACFELM_RS02055 (ACFELM_02055) ruvX 440992..441426 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACFELM_RS02060 (ACFELM_02060) - 441426..441995 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  ACFELM_RS02065 (ACFELM_02065) - 442044..442937 (-) 894 WP_003162015.1 energy transducer TonB -
  ACFELM_RS02070 (ACFELM_02070) gshB 443084..444037 (-) 954 WP_003100943.1 glutathione synthase -
  ACFELM_RS02075 (ACFELM_02075) pilG 444292..444699 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACFELM_RS02080 (ACFELM_02080) pilH 444746..445111 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACFELM_RS02085 (ACFELM_02085) - 445162..445698 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACFELM_RS02090 (ACFELM_02090) pilJ 445783..447831 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACFELM_RS02095 (ACFELM_02095) pilK 447892..448767 (+) 876 WP_023115713.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=954893 ACFELM_RS02080 WP_003084587.1 444746..445111(+) (pilH) [Pseudomonas aeruginosa strain 238636E_ID015]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=954893 ACFELM_RS02080 WP_003084587.1 444746..445111(+) (pilH) [Pseudomonas aeruginosa strain 238636E_ID015]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364