Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMM33_RS00140 Genome accession   NZ_AP025940
Coordinates   24853..26214 (+) Length   453 a.a.
NCBI ID   WP_078148504.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 19853..31214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM33_RS00105 - 20210..21007 (-) 798 Protein_14 transposase -
  QMM33_RS00110 (PC0204_00150) comW 21272..21508 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  QMM33_RS00115 (PC0204_00160) - 21739..23025 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  QMM33_RS00120 (PC0204_00170) tadA 23226..23693 (+) 468 WP_000291870.1 tRNA adenosine(34) deaminase TadA -
  QMM33_RS00130 (PC0204_00180) - 23879..24322 (+) 444 WP_000701992.1 dUTP diphosphatase -
  QMM33_RS00135 (PC0204_00190) - 24324..24839 (+) 516 WP_000691236.1 histidine phosphatase family protein -
  QMM33_RS00140 (PC0204_00200) radA 24853..26214 (+) 1362 WP_078148504.1 DNA repair protein RadA Machinery gene
  QMM33_RS00145 (PC0204_00210) - 26287..26784 (+) 498 WP_001809263.1 carbonic anhydrase -
  QMM33_RS00150 (PC0204_00220) - 26809..27592 (+) 784 Protein_22 PrsW family glutamic-type intramembrane protease -
  QMM33_RS00155 (PC0204_00230) - 27737..28705 (+) 969 WP_000010163.1 ribose-phosphate diphosphokinase -
  QMM33_RS00160 (PC0204_00240) - 28839..29120 (-) 282 Protein_24 transposase family protein -
  QMM33_RS00165 - 29247..30154 (-) 908 Protein_25 Rpn family recombination-promoting nuclease/putative transposase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49405.88 Da        Isoelectric Point: 6.1868

>NTDB_id=95486 QMM33_RS00140 WP_078148504.1 24853..26214(+) (radA) [Streptococcus pneumoniae strain PZ900700204]
MAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFSRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIR
RVNRIEQRINEAAKLGFTKIYVPQNSLTGITLPKEIQVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=95486 QMM33_RS00140 WP_078148504.1 24853..26214(+) (radA) [Streptococcus pneumoniae strain PZ900700204]
ATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGCCCCAACTG
TGGGTCTTGGTCTTCTTTTGTGGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAGAAAA
CCAAGCCCATGAAACTAGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAGCCGTGTG
CTTGGAGGCGGAGTGGTACCAGGAAGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCAACTCTTCTCCTACA
AGTCTCAACCCAGTTGTCCCAAGTGGGGACAGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTACGTG
CAGAGCGCTTAGGTGATATTGATAGTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGTGCAGAAGTGGAG
CGTATCCAGCCAGACTTTCTTATTATTGATTCCATCCAGACCATCATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGT
TTCTCAGGTACGTGAAGTGACCGCTGAACTCATGCAGTTGGCCAAGACCAATAACATTGCCATCTTTATCGTAGGTCATG
TGACCAAAGAAGGAACCTTGGCTGGGCCTCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAGCGT
CACCACACCTTTCGTATTTTGAGAGCGGTCAAAAATCGTTTTGGTTCTACTAATGAGATTGGGATTTTTGAGATGCAGTC
GGGCGGCTTGGTTGAGGTACTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGGGCGACTGGTTCCTCCATCG
TTGTAACCATGGAAGGGACGCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCGACCATGTTTGGAAATGCCAAG
CGTACTACGACAGGACTTGATTTTAACCGTGCTAGCTTGATTATGGCTGTTTTGGAAAAACGGGCAGGGCTTCTCTTGCA
AAATCAGGATGCCTATCTCAAATCTGCTGGTGGTGTTAAATTGGATGAACCTGCCATTGACTTGGCTGTTGCAGTTGCTA
TTGCTTCGAGCTACAAAGACAAGCCAACTAATCCTCAGGAATGTTTTGTCGGAGAACTGGGCTTGACAGGAGAGATTCGG
CGCGTGAATCGTATTGAGCAACGCATCAACGAAGCTGCTAAACTGGGCTTTACTAAGATTTATGTACCTCAGAATTCCTT
GACAGGAATCACTCTGCCTAAGGAAATTCAGGTCATTGGCGTGACAACGATTCAGGAAGTCTTGAAAAAGGTCTTTGCAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(63-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

99.558

100

0.996
  radA Streptococcus pneumoniae D39

99.558

100

0.996
  radA Streptococcus pneumoniae R6

99.558

100

0.996
  radA Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radA Streptococcus mitis NCTC 12261

99.117

100

0.991
  radA Streptococcus mitis SK321

99.117

100

0.991
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

100

0.629

Multiple sequence alignment