Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACFELF_RS09640 Genome accession   NZ_CP172851
Coordinates   2035711..2036040 (+) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 238637E_ID016     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2030711..2041040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELF_RS09625 (ACFELF_09625) - 2031002..2032207 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  ACFELF_RS09630 (ACFELF_09630) - 2032400..2033428 (+) 1029 WP_003116434.1 glycosyltransferase family 4 protein -
  ACFELF_RS09635 (ACFELF_09635) - 2033523..2035520 (+) 1998 WP_031633096.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACFELF_RS09640 (ACFELF_09640) comEA/comE1 2035711..2036040 (+) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  ACFELF_RS09650 (ACFELF_09650) - 2036257..2037453 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACFELF_RS09655 (ACFELF_09655) uvrB 2037641..2039653 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=954809 ACFELF_RS09640 WP_023115163.1 2035711..2036040(+) (comEA/comE1) [Pseudomonas aeruginosa strain 238637E_ID016]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=954809 ACFELF_RS09640 WP_023115163.1 2035711..2036040(+) (comEA/comE1) [Pseudomonas aeruginosa strain 238637E_ID016]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394