Detailed information NTG0954804

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELF_RS06965
• Genome accession: NZ_CP172851
• Coordinates: 1477225..1478229 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 238637E_ID016
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1472225..1483229

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELF_RS06935 (ACFELF_06935)	fghA	1472317..1473168 (+)	852	WP_023115121.1	S-formylglutathione hydrolase	-
ACFELF_RS06940 (ACFELF_06940)	ispF	1473239..1473712 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELF_RS06945 (ACFELF_06945)	truD	1473709..1474776 (+)	1068	WP_023115122.1	tRNA pseudouridine(13) synthase TruD	-
ACFELF_RS06950 (ACFELF_06950)	surE	1474764..1475513 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELF_RS06955 (ACFELF_06955)	-	1475546..1476181 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELF_RS06960 (ACFELF_06960)	-	1476227..1477120 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELF_RS06965 (ACFELF_06965)	rpoS	1477225..1478229 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFELF_RS06970 (ACFELF_06970)	fdxA	1478656..1478979 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACFELF_RS06975 (ACFELF_06975)	mutS	1479046..1481613 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELF_RS06980 (ACFELF_06980)	-	1481739..1482746 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=954804 ACFELF_RS06965 WP_003113871.1 1477225..1478229(+) (rpoS) [Pseudomonas aeruginosa strain 238637E_ID016]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=954804 ACFELF_RS06965 WP_003113871.1 1477225..1478229(+) (rpoS) [Pseudomonas aeruginosa strain 238637E_ID016]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653