Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACFELB_RS10015 Genome accession   NZ_CP172850
Coordinates   2140776..2141411 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 238638E_ID017     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2135776..2146411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELB_RS10000 (ACFELB_10000) - 2136482..2137726 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  ACFELB_RS10005 (ACFELB_10005) - 2137814..2138347 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ACFELB_RS10010 (ACFELB_10010) comA 2138478..2140703 (+) 2226 WP_400589903.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACFELB_RS10015 (ACFELB_10015) exbB 2140776..2141411 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACFELB_RS10020 (ACFELB_10020) - 2141408..2141848 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  ACFELB_RS10025 (ACFELB_10025) lpxK 2141848..2142846 (+) 999 WP_124184275.1 tetraacyldisaccharide 4'-kinase -
  ACFELB_RS10030 (ACFELB_10030) - 2142884..2143069 (+) 186 WP_003091157.1 Trm112 family protein -
  ACFELB_RS10035 (ACFELB_10035) kdsB 2143069..2143833 (+) 765 WP_003130694.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACFELB_RS10040 (ACFELB_10040) - 2143833..2144297 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ACFELB_RS10045 (ACFELB_10045) murB 2144294..2145313 (+) 1020 WP_196691529.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=954713 ACFELB_RS10015 WP_003091163.1 2140776..2141411(+) (exbB) [Pseudomonas aeruginosa strain 238638E_ID017]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=954713 ACFELB_RS10015 WP_003091163.1 2140776..2141411(+) (exbB) [Pseudomonas aeruginosa strain 238638E_ID017]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGCCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81