Detailed information NTG0954702

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELB_RS06780
• Genome accession: NZ_CP172850
• Coordinates: 1437982..1438986 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 238638E_ID017
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1432982..1443986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELB_RS06750 (ACFELB_06750)	fghA	1433074..1433925 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
ACFELB_RS06755 (ACFELB_06755)	ispF	1433996..1434469 (+)	474	WP_128665772.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELB_RS06760 (ACFELB_06760)	truD	1434466..1435533 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
ACFELB_RS06765 (ACFELB_06765)	surE	1435521..1436270 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELB_RS06770 (ACFELB_06770)	-	1436303..1436938 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELB_RS06775 (ACFELB_06775)	-	1436984..1437877 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELB_RS06780 (ACFELB_06780)	rpoS	1437982..1438986 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFELB_RS06785 (ACFELB_06785)	fdxA	1439413..1439736 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ACFELB_RS06790 (ACFELB_06790)	mutS	1439803..1442370 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELB_RS06795 (ACFELB_06795)	-	1442496..1443503 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=954702 ACFELB_RS06780 WP_003113871.1 1437982..1438986(+) (rpoS) [Pseudomonas aeruginosa strain 238638E_ID017]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=954702 ACFELB_RS06780 WP_003113871.1 1437982..1438986(+) (rpoS) [Pseudomonas aeruginosa strain 238638E_ID017]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653