Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACFELC_RS27305 Genome accession   NZ_CP172849
Coordinates   5859633..5860229 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain 238641E_ID020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5854633..5865229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELC_RS27285 (ACFELC_27285) aroK 5855764..5856282 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELC_RS27290 (ACFELC_27290) pilQ 5856294..5858438 (-) 2145 WP_128685076.1 type 4a pilus secretin PilQ Machinery gene
  ACFELC_RS27295 (ACFELC_27295) comL/pilP 5858492..5859016 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELC_RS27300 (ACFELC_27300) pilO 5859013..5859636 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELC_RS27305 (ACFELC_27305) pilN 5859633..5860229 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFELC_RS27310 (ACFELC_27310) pilM 5860229..5861293 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFELC_RS27315 (ACFELC_27315) - 5861478..5863949 (+) 2472 WP_039026606.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=954663 ACFELC_RS27305 WP_003095839.1 5859633..5860229(-) (pilN) [Pseudomonas aeruginosa strain 238641E_ID020]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=954663 ACFELC_RS27305 WP_003095839.1 5859633..5860229(-) (pilN) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAGCTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGGCGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGTGCAGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369