Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   ACFELC_RS27295 Genome accession   NZ_CP172849
Coordinates   5858492..5859016 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 238641E_ID020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5853492..5864016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELC_RS27280 (ACFELC_27280) aroB 5854608..5855714 (-) 1107 WP_033977028.1 3-dehydroquinate synthase -
  ACFELC_RS27285 (ACFELC_27285) aroK 5855764..5856282 (-) 519 WP_003095833.1 shikimate kinase AroK -
  ACFELC_RS27290 (ACFELC_27290) pilQ 5856294..5858438 (-) 2145 WP_128685076.1 type 4a pilus secretin PilQ Machinery gene
  ACFELC_RS27295 (ACFELC_27295) comL/pilP 5858492..5859016 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  ACFELC_RS27300 (ACFELC_27300) pilO 5859013..5859636 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACFELC_RS27305 (ACFELC_27305) pilN 5859633..5860229 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  ACFELC_RS27310 (ACFELC_27310) pilM 5860229..5861293 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  ACFELC_RS27315 (ACFELC_27315) - 5861478..5863949 (+) 2472 WP_039026606.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=954661 ACFELC_RS27295 WP_003095836.1 5858492..5859016(-) (comL/pilP) [Pseudomonas aeruginosa strain 238641E_ID020]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=954661 ACFELC_RS27295 WP_003095836.1 5858492..5859016(-) (comL/pilP) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCTT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACTCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362