Detailed information NTG0954600

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELC_RS07035
• Genome accession: NZ_CP172849
• Coordinates: 1507665..1508669 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 238641E_ID020
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1502665..1513669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELC_RS07005 (ACFELC_07005)	fghA	1502757..1503608 (+)	852	WP_070748660.1	S-formylglutathione hydrolase	-
ACFELC_RS07010 (ACFELC_07010)	ispF	1503679..1504152 (+)	474	WP_395559044.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELC_RS07015 (ACFELC_07015)	truD	1504149..1505216 (+)	1068	WP_033974209.1	tRNA pseudouridine(13) synthase TruD	-
ACFELC_RS07020 (ACFELC_07020)	surE	1505204..1505953 (+)	750	WP_400565695.1	5'/3'-nucleotidase SurE	-
ACFELC_RS07025 (ACFELC_07025)	-	1505986..1506621 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELC_RS07030 (ACFELC_07030)	-	1506667..1507560 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELC_RS07035 (ACFELC_07035)	rpoS	1507665..1508669 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ACFELC_RS07040 (ACFELC_07040)	fdxA	1509096..1509419 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACFELC_RS07045 (ACFELC_07045)	mutS	1509486..1512053 (-)	2568	WP_071546755.1	DNA mismatch repair protein MutS	-
ACFELC_RS07050 (ACFELC_07050)	-	1512188..1513195 (-)	1008	WP_058179162.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=954600 ACFELC_RS07035 WP_003113871.1 1507665..1508669(+) (rpoS) [Pseudomonas aeruginosa strain 238641E_ID020]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=954600 ACFELC_RS07035 WP_003113871.1 1507665..1508669(+) (rpoS) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGTCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653