Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ACFELC_RS00105 Genome accession   NZ_CP172849
Coordinates   22726..23751 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 238641E_ID020     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 17726..28751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELC_RS00085 (ACFELC_00085) trkA 18380..19753 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  ACFELC_RS00090 (ACFELC_00090) rsmB 19781..21085 (-) 1305 WP_400564919.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ACFELC_RS00095 (ACFELC_00095) fmt 21082..22026 (-) 945 WP_039027019.1 methionyl-tRNA formyltransferase -
  ACFELC_RS00100 (ACFELC_00100) def 22081..22587 (-) 507 WP_400564922.1 peptide deformylase -
  ACFELC_RS00105 (ACFELC_00105) tsaP 22726..23751 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACFELC_RS00110 (ACFELC_00110) dprA 23887..24975 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  ACFELC_RS00115 (ACFELC_00115) - 25016..25573 (+) 558 WP_033968205.1 L-threonylcarbamoyladenylate synthase -
  ACFELC_RS00120 (ACFELC_00120) - 25583..26560 (-) 978 WP_039027020.1 NADPH:quinone reductase -
  ACFELC_RS00125 (ACFELC_00125) hemF 26751..27668 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  ACFELC_RS00130 (ACFELC_00130) aroE 27726..28550 (+) 825 WP_033978595.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=954580 ACFELC_RS00105 WP_003097294.1 22726..23751(+) (tsaP) [Pseudomonas aeruginosa strain 238641E_ID020]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=954580 ACFELC_RS00105 WP_003097294.1 22726..23751(+) (tsaP) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGTCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCACGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCACCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCTTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393