Detailed information NTG0954497

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACFELG_RS06605
• Genome accession: NZ_CP172848
• Coordinates: 1408816..1409820 (+)
• Length: 334 a.a.
• NCBI ID: WP_003143264.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain 238628E_ID004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1403816..1414820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFELG_RS06575 (ACFELG_06575)	fghA	1403908..1404759 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ACFELG_RS06580 (ACFELG_06580)	ispF	1404830..1405303 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACFELG_RS06585 (ACFELG_06585)	truD	1405300..1406367 (+)	1068	WP_033937525.1	tRNA pseudouridine(13) synthase TruD	-
ACFELG_RS06590 (ACFELG_06590)	surE	1406355..1407104 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ACFELG_RS06595 (ACFELG_06595)	-	1407137..1407772 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACFELG_RS06600 (ACFELG_06600)	-	1407818..1408711 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACFELG_RS06605 (ACFELG_06605)	rpoS	1408816..1409820 (+)	1005	WP_003143264.1	RNA polymerase sigma factor RpoS	Regulator
ACFELG_RS06610 (ACFELG_06610)	fdxA	1410247..1410570 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ACFELG_RS06615 (ACFELG_06615)	mutS	1410637..1413204 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ACFELG_RS06620 (ACFELG_06620)	-	1413330..1414337 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38254.43 Da
• Isoelectric Point: 5.0507

>NTDB_id=954497 ACFELG_RS06605 WP_003143264.1 1408816..1409820(+) (rpoS) [Pseudomonas aeruginosa strain 238628E_ID004]
MALKKEGPEFDRDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=954497 ACFELG_RS06605 WP_003143264.1 1408816..1409820(+) (rpoS) [Pseudomonas aeruginosa strain 238628E_ID004]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCGCGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.381	83.234	0.611