Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACF1RT_RS07915 Genome accession   NZ_CP172847
Coordinates   1592356..1592838 (+) Length   160 a.a.
NCBI ID   WP_002264383.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587356..1597838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS07900 (ACF1RT_07900) rpoZ 1589181..1589498 (-) 318 WP_002263044.1 DNA-directed RNA polymerase subunit omega -
  ACF1RT_RS07905 (ACF1RT_07905) gmk 1589522..1590154 (-) 633 WP_002263045.1 guanylate kinase -
  ACF1RT_RS07910 (ACF1RT_07910) - 1590604..1592211 (-) 1608 WP_002263046.1 ribonuclease Y -
  ACF1RT_RS07915 (ACF1RT_07915) luxS 1592356..1592838 (+) 483 WP_002264383.1 S-ribosylhomocysteine lyase Regulator
  ACF1RT_RS07920 (ACF1RT_07920) - 1592999..1594639 (-) 1641 WP_226710892.1 cell division site-positioning protein MapZ family protein -
  ACF1RT_RS07925 (ACF1RT_07925) - 1594655..1595809 (-) 1155 WP_002266358.1 class I SAM-dependent RNA methyltransferase -
  ACF1RT_RS07935 (ACF1RT_07935) gpsB 1596259..1596597 (-) 339 WP_002263050.1 cell division regulator GpsB -
  ACF1RT_RS07940 (ACF1RT_07940) - 1596703..1597224 (-) 522 WP_019313096.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17976.62 Da        Isoelectric Point: 6.1364

>NTDB_id=954452 ACF1RT_RS07915 WP_002264383.1 1592356..1592838(+) (luxS) [Streptococcus mutans strain DPC6143]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGMIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEIANTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=954452 ACF1RT_RS07915 WP_002264383.1 1592356..1592838(+) (luxS) [Streptococcus mutans strain DPC6143]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGATGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTGCTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAGCTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369