Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACF1RT_RS05490 Genome accession   NZ_CP172847
Coordinates   1083211..1084173 (-) Length   320 a.a.
NCBI ID   WP_002262859.1    Uniprot ID   Q8DUE0
Organism   Streptococcus mutans strain DPC6143     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1078211..1089173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS05465 (ACF1RT_05465) dprA 1079014..1079856 (-) 843 WP_002262865.1 DNA-processing protein DprA Machinery gene
  ACF1RT_RS05470 (ACF1RT_05470) - 1080023..1080304 (-) 282 WP_002262863.1 hypothetical protein -
  ACF1RT_RS05475 (ACF1RT_05475) - 1080376..1081392 (-) 1017 WP_002262862.1 siderophore ABC transporter substrate-binding protein -
  ACF1RT_RS05480 (ACF1RT_05480) - 1081440..1082246 (-) 807 WP_002270389.1 ABC transporter ATP-binding protein -
  ACF1RT_RS05485 (ACF1RT_05485) - 1082243..1083214 (-) 972 WP_002279762.1 iron chelate uptake ABC transporter family permease subunit -
  ACF1RT_RS05490 (ACF1RT_05490) ceuB 1083211..1084173 (-) 963 WP_002262859.1 ABC transporter permease Machinery gene
  ACF1RT_RS05495 (ACF1RT_05495) - 1084347..1085129 (-) 783 WP_002262858.1 ribonuclease HII -
  ACF1RT_RS05500 (ACF1RT_05500) ylqF 1085116..1085967 (-) 852 WP_002262857.1 ribosome biogenesis GTPase YlqF -
  ACF1RT_RS05505 (ACF1RT_05505) - 1086164..1087129 (-) 966 WP_002262856.1 hypothetical protein -
  ACF1RT_RS05510 (ACF1RT_05510) - 1087414..1087752 (-) 339 WP_002262855.1 ATP cone domain-containing protein -
  ACF1RT_RS05515 (ACF1RT_05515) dapA 1088060..1088941 (-) 882 WP_002262854.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34993.26 Da        Isoelectric Point: 9.8764

>NTDB_id=954423 ACF1RT_RS05490 WP_002262859.1 1083211..1084173(-) (ceuB) [Streptococcus mutans strain DPC6143]
MKKVLTVPVLGAAAVFLSLVSIFIGVKSLSLFELGSLDDSQLNILLSSRIPRTVSILIAGSSLAVCGLIMQQLTQNKFVS
PTTAGTMDWAKLGVVVTIILFSKSSLLLQLIISSVFVIFGSLFFIYLLKVIKFKDDVFIPLVGLMLGKVVSAISTFLGVQ
FQILQSVNSWLEGHFSIMTSHRYEILFLVLPCMVLIYLYAHQFTIAGLGEDFSKNLGLNYQFIINLGLVLVSVMTAIIVT
VVGSLPFLGLIVPNSISAIKGDNMKNNLILTSFLGAVIVLICDIFGRLIIFPYEVSIGLTMGIIGSIFFLYFLMKGRRRS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=954423 ACF1RT_RS05490 WP_002262859.1 1083211..1084173(-) (ceuB) [Streptococcus mutans strain DPC6143]
ATGAAAAAAGTACTCACTGTTCCAGTGCTGGGTGCAGCTGCAGTCTTTCTTTCTCTCGTTTCAATATTTATCGGTGTTAA
GAGTCTATCGCTTTTTGAACTGGGCTCTTTAGACGATTCACAACTTAACATTTTATTATCTAGTCGCATTCCTAGAACGG
TTAGTATTTTAATTGCTGGCTCTAGTTTAGCCGTTTGTGGTTTAATTATGCAGCAATTAACGCAAAATAAATTTGTCTCA
CCGACAACGGCTGGGACAATGGATTGGGCAAAGCTAGGTGTTGTTGTCACTATTATCTTATTTAGTAAATCTTCTTTACT
ATTGCAGTTGATTATTTCATCGGTCTTTGTCATTTTTGGTTCTTTGTTTTTTATCTATCTTTTAAAGGTTATTAAATTTA
AGGATGATGTTTTCATTCCTCTAGTAGGTCTGATGTTGGGGAAAGTTGTATCTGCAATCAGTACTTTTTTAGGAGTACAG
TTTCAGATATTGCAGTCTGTAAACAGTTGGTTAGAAGGTCATTTTTCCATCATGACTTCTCATCGATATGAGATTTTATT
TTTGGTGCTGCCTTGCATGGTATTAATTTACCTTTATGCTCATCAGTTTACTATAGCTGGCTTGGGAGAAGATTTTTCTA
AAAATCTAGGTTTGAATTATCAATTTATTATTAATTTAGGCTTGGTTCTTGTTTCGGTTATGACAGCTATCATTGTAACA
GTTGTTGGCAGTCTTCCTTTTTTAGGTTTGATTGTTCCTAATTCGATTTCTGCTATCAAGGGCGATAATATGAAGAACAA
CTTAATATTAACCTCTTTTTTAGGTGCTGTTATTGTGCTTATTTGTGATATTTTTGGACGTCTTATTATTTTTCCATATG
AAGTTTCTATTGGATTGACTATGGGAATAATAGGAAGTATCTTTTTCCTTTATTTTTTAATGAAGGGAAGAAGGCGTTCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.768

99.688

0.456