Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACF1RT_RS00205 Genome accession   NZ_CP172847
Coordinates   28539..29294 (+) Length   251 a.a.
NCBI ID   WP_002263137.1    Uniprot ID   Q8DWM0
Organism   Streptococcus mutans strain DPC6143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23539..34294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS00185 (ACF1RT_00185) mreD 24281..24787 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  ACF1RT_RS00190 (ACF1RT_00190) gbpB 24897..26192 (+) 1296 WP_002264119.1 glucan-binding protein GbpB -
  ACF1RT_RS00195 (ACF1RT_00195) - 26317..27285 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  ACF1RT_RS00200 (ACF1RT_00200) - 27374..28549 (+) 1176 WP_002293595.1 pyridoxal phosphate-dependent aminotransferase -
  ACF1RT_RS00205 (ACF1RT_00205) recO 28539..29294 (+) 756 WP_002263137.1 DNA repair protein RecO Machinery gene
  ACF1RT_RS00210 (ACF1RT_00210) plsX 29502..30500 (+) 999 WP_226711126.1 phosphate acyltransferase PlsX -
  ACF1RT_RS00215 (ACF1RT_00215) - 30502..30750 (+) 249 WP_002263135.1 acyl carrier protein -
  ACF1RT_RS00220 (ACF1RT_00220) comA 30940..31521 (+) 582 WP_002265932.1 ATP-binding cassette domain-containing protein Regulator
  ACF1RT_RS00225 (ACF1RT_00225) purC 31643..32350 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29353.88 Da        Isoelectric Point: 6.6577

>NTDB_id=954362 ACF1RT_RS00205 WP_002263137.1 28539..29294(+) (recO) [Streptococcus mutans strain DPC6143]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=954362 ACF1RT_RS00205 WP_002263137.1 28539..29294(+) (recO) [Streptococcus mutans strain DPC6143]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATATTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653