Detailed information NTG0954326

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIA66_RS13750
• Genome accession: NZ_CP172819
• Coordinates: 2800670..2801662 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BS-04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2795670..2806662

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIA66_RS13730	otnK	2796431..2797693 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ACIA66_RS13735	ygbL	2797690..2798328 (+)	639	WP_001278994.1	aldolase	-
ACIA66_RS13740	ygbM	2798333..2799109 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACIA66_RS13745	ygbN	2799198..2800562 (+)	1365	WP_000104439.1	GntP family transporter	-
ACIA66_RS13750	rpoS	2800670..2801662 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACIA66_RS13755	nlpD	2801725..2802819 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACIA66_RS13760	pcm	2803004..2803630 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACIA66_RS13765	surE	2803624..2804384 (-)	761	Protein_2691	5'/3'-nucleotidase SurE	-
ACIA66_RS13770	truD	2804365..2805414 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACIA66_RS13775	ispF	2805411..2805890 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIA66_RS13780	ispD	2805890..2806600 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=954326 ACIA66_RS13750 WP_000081550.1 2800670..2801662(-) (rpoS) [Escherichia coli strain BS-04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=954326 ACIA66_RS13750 WP_000081550.1 2800670..2801662(-) (rpoS) [Escherichia coli strain BS-04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715