Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   QMM27_RS04615 Genome accession   NZ_AP025939
Coordinates   919864..920673 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 914864..925673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS04600 (Utah35B_09090) mutY 916586..917761 (+) 1176 WP_000886147.1 A/G-specific adenine glycosylase -
  QMM27_RS04605 (Utah35B_09100) micA 917816..918520 (+) 705 WP_000722076.1 response regulator YycF Regulator
  QMM27_RS04610 (Utah35B_09110) micB 918513..919862 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  QMM27_RS04615 (Utah35B_09120) vicX 919864..920673 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  QMM27_RS04620 (Utah35B_09130) - 920764..921006 (+) 243 WP_000208080.1 DUF6290 family protein -
  QMM27_RS04625 (Utah35B_09140) - 921008..921262 (+) 255 WP_001812387.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMM27_RS04630 (Utah35B_09150) - 921309..922083 (+) 775 Protein_920 ion channel -
  QMM27_RS04635 (Utah35B_09160) - 922346..923332 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=95429 QMM27_RS04615 WP_001289493.1 919864..920673(+) (vicX) [Streptococcus pneumoniae strain Utah_35B-24]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=95429 QMM27_RS04615 WP_001289493.1 919864..920673(+) (vicX) [Streptococcus pneumoniae strain Utah_35B-24]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment