Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACIA68_RS21915 Genome accession   NZ_CP172818
Coordinates   4483901..4485283 (+) Length   460 a.a.
NCBI ID   WP_001029698.1    Uniprot ID   A0A2T3RLH6
Organism   Escherichia coli strain HS-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4478901..4490283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA68_RS21895 deoD 4480175..4480894 (+) 720 WP_000224877.1 purine-nucleoside phosphorylase -
  ACIA68_RS21900 lplA 4481090..4482106 (-) 1017 WP_000105852.1 lipoate--protein ligase LplA -
  ACIA68_RS21905 ytjB 4482134..4482778 (-) 645 WP_000124615.1 YtjB family periplasmic protein -
  ACIA68_RS21910 serB 4482884..4483852 (+) 969 WP_001132956.1 phosphoserine phosphatase -
  ACIA68_RS21915 radA/sms 4483901..4485283 (+) 1383 WP_001029698.1 DNA repair protein RadA Machinery gene
  ACIA68_RS21920 nadR 4485304..4486536 (+) 1233 WP_000093833.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  ACIA68_RS21925 - 4486709..4486933 (+) 225 WP_400165104.1 hypothetical protein -
  ACIA68_RS21930 nadS 4486942..4487210 (+) 269 Protein_4273 NadS family protein -
  ACIA68_RS21935 ettA 4487258..4488925 (-) 1668 WP_000046749.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49442.02 Da        Isoelectric Point: 7.1936

>NTDB_id=954284 ACIA68_RS21915 WP_001029698.1 4483901..4485283(+) (radA/sms) [Escherichia coli strain HS-02]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDH
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=954284 ACIA68_RS21915 WP_001029698.1 4483901..4485283(+) (radA/sms) [Escherichia coli strain HS-02]
GTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCGGGGCCGATTATCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATCACCGAGGTGCGTCTTGCTGCGTCGCCAACGGTGGCGCGTAACGAGCGTCTCAGTGGCT
ATGCCGGTAGCGCCGGGGTGGCAAAAGTCCAGAAACTTTCCGATATCAGCCTTGAGGAGTTGCCGCGTTTTTCAACCGGA
TTTAAAGAGTTCGACCGCGTATTAGGCGGTGGGGTGGTGCCGGGAAGCGCCATTCTGATTGGCGGTAATCCAGGCGCAGG
GAAATCCACGCTGCTACTGCAAACGCTGTGCAAACTGGCCCAGCAGATGAAAACGCTGTATGTCACCGGCGAAGAGTCGC
TGCAACAGGTGGCAATGCGCGCTCATCGCCTCGGCCTGCCGACTGACAATCTCAATATGTTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATTGCCGAAGAAGAGCAACCGAAGCTGATGGTAATTGACTCCATCCAGGTGATGCATATGGCGGATGT
ACAATCATCACCTGGCAGCGTGGCGCAGGTGCGTGAAACGGCGGCTTATCTGACGCGCTTCGCCAAAACGCGTGGCGTGG
CGATTGTCATGGTGGGGCACGTAACCAAAGATGGTTCGCTGGCAGGCCCTAAAGTGCTGGAACACTGTATCGACTGCTCG
GTGCTTCTGGACGGCGATGCCGATTCCCGTTTCCGCACCTTACGCAGCCATAAAAACCGTTTCGGCGCGGTGAATGAGCT
GGGCGTCTTCGCGATGACTGAACAGGGACTGCGTGAAGTTAGCAACCCTTCCGCCATCTTCTTAAGTCGCGGCGATGAAG
TGACCTCCGGCAGCTCAGTGATGGTGGTGTGGGAAGGAACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGATCAC
TCGATGATGGCGAATCCACGCCGCGTCGCAGTAGGGCTGGAGCAAAACCGTCTGGCAATCCTGCTGGCGGTGCTGCACCG
TCACGGTGGGTTGCAAATGGCCGATCAGGATGTGTTTGTGAATGTGGTCGGTGGCGTGAAGGTAACCGAAACCAGTGCCG
ATTTAGCGTTACTGCTGGCGATGGTTTCCAGCCTGCGCGACAGACCACTACCGCAGGATCTGGTGGTGTTTGGTGAAGTC
GGGCTGGCAGGGGAGATCCGCCCGGTGCCCAGCGGCCAGGAGCGGATTTCTGAAGCGGCGAAACATGGTTTTCGGCGGGC
GATTGTTCCGGCAGCCAACGTGCCGAAAAAAGCGCCGGAAGGGATGCAGATTTTTGGCGTTAAAAAACTCTCCGACGCGC
TTAGCGTGTTCGACGACTTATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RLH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.827

99.348

0.465
  radA Streptococcus mitis SK321

43.86

99.13

0.435
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43