Detailed information NTG0954249

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIA68_RS13820
• Genome accession: NZ_CP172818
• Coordinates: 2794512..2795504 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain HS-02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2789512..2800504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIA68_RS13800	otnK	2790288..2791454 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
ACIA68_RS13805	ygbL	2791546..2792184 (+)	639	WP_001278994.1	aldolase	-
ACIA68_RS13810	ygbM	2792189..2792965 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACIA68_RS13815	ygbN	2793054..2794418 (+)	1365	WP_000104441.1	GntP family transporter	-
ACIA68_RS13820	rpoS	2794512..2795504 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACIA68_RS13825	nlpD	2795567..2796661 (-)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
ACIA68_RS13830	pcm	2796846..2797472 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACIA68_RS13835	surE	2797466..2798227 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACIA68_RS13840	truD	2798208..2799257 (-)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
ACIA68_RS13845	ispF	2799254..2799733 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIA68_RS13850	ispD	2799733..2800443 (-)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=954249 ACIA68_RS13820 WP_000081550.1 2794512..2795504(-) (rpoS) [Escherichia coli strain HS-02]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=954249 ACIA68_RS13820 WP_000081550.1 2794512..2795504(-) (rpoS) [Escherichia coli strain HS-02]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715