Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACIA69_RS13770 Genome accession   NZ_CP172817
Coordinates   2780604..2781596 (-) Length   330 a.a.
NCBI ID   WP_400168596.1    Uniprot ID   -
Organism   Escherichia coli strain HS-01     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775604..2786596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA69_RS13750 otnK 2776379..2777641 (+) 1263 WP_000590403.1 3-oxo-tetronate kinase -
  ACIA69_RS13755 ygbL 2777638..2778276 (+) 639 WP_001278994.1 aldolase -
  ACIA69_RS13760 ygbM 2778281..2779057 (+) 777 WP_001136934.1 HPr family phosphocarrier protein -
  ACIA69_RS13765 ygbN 2779146..2780510 (+) 1365 WP_000104441.1 GntP family transporter -
  ACIA69_RS13770 rpoS 2780604..2781596 (-) 993 WP_400168596.1 RNA polymerase sigma factor RpoS Regulator
  ACIA69_RS13775 nlpD 2781659..2782705 (-) 1047 WP_306308696.1 murein hydrolase activator NlpD -
  ACIA69_RS13780 pcm 2782890..2783516 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACIA69_RS13785 surE 2783510..2784271 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ACIA69_RS13790 truD 2784252..2785301 (-) 1050 WP_000568946.1 tRNA pseudouridine(13) synthase TruD -
  ACIA69_RS13795 ispF 2785298..2785777 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACIA69_RS13800 ispD 2785777..2786487 (-) 711 WP_000246135.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37944.79 Da        Isoelectric Point: 4.5597

>NTDB_id=954170 ACIA69_RS13770 WP_400168596.1 2780604..2781596(-) (rpoS) [Escherichia coli strain HS-01]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRALDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=954170 ACIA69_RS13770 WP_400168596.1 2780604..2781596(-) (rpoS) [Escherichia coli strain HS-01]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
CGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 region 3 (Sigma70_r3)

(174-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715