Detailed information NTG0954088

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACIA67_RS13600
• Genome accession: NZ_CP172816
• Coordinates: 2776535..2777527 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain BS-01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2771535..2782527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIA67_RS13580	otnK	2772310..2773572 (+)	1263	WP_094771024.1	3-oxo-tetronate kinase	-
ACIA67_RS13585	ygbL	2773569..2774207 (+)	639	WP_094771025.1	aldolase	-
ACIA67_RS13590	ygbM	2774212..2774988 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACIA67_RS13595	ygbN	2775077..2776441 (+)	1365	WP_000104459.1	GntP family transporter	-
ACIA67_RS13600	rpoS	2776535..2777527 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACIA67_RS13605	nlpD	2777590..2778684 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACIA67_RS13610	pcm	2778869..2779495 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACIA67_RS13615	surE	2779489..2780250 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACIA67_RS13620	truD	2780231..2781280 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ACIA67_RS13625	ispF	2781277..2781756 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACIA67_RS13630	ispD	2781756..2782466 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=954088 ACIA67_RS13600 WP_000081550.1 2776535..2777527(-) (rpoS) [Escherichia coli strain BS-01]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=954088 ACIA67_RS13600 WP_000081550.1 2776535..2777527(-) (rpoS) [Escherichia coli strain BS-01]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715