Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACGH7X_RS21700 Genome accession   NZ_CP172448
Coordinates   4738984..4740393 (-) Length   469 a.a.
NCBI ID   WP_399887058.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR51     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4733984..4745393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH7X_RS21680 (ACGH7X_21680) - 4735235..4735906 (+) 672 WP_399887054.1 response regulator -
  ACGH7X_RS21685 (ACGH7X_21685) - 4735926..4736582 (-) 657 WP_399887055.1 phosphatase PAP2 family protein -
  ACGH7X_RS21690 (ACGH7X_21690) - 4736757..4737620 (+) 864 WP_399887056.1 hypothetical protein -
  ACGH7X_RS21695 (ACGH7X_21695) disA 4737778..4738902 (-) 1125 WP_399887057.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ACGH7X_RS21700 (ACGH7X_21700) radA/sms 4738984..4740393 (-) 1410 WP_399887058.1 DNA repair protein RadA Machinery gene
  ACGH7X_RS21705 (ACGH7X_21705) - 4740638..4742440 (+) 1803 WP_399887059.1 hypothetical protein -
  ACGH7X_RS21710 (ACGH7X_21710) - 4742500..4743312 (-) 813 WP_399887060.1 hypothetical protein -
  ACGH7X_RS21715 (ACGH7X_21715) - 4743384..4744346 (+) 963 WP_399887061.1 Ppx/GppA family phosphatase -
  ACGH7X_RS21720 (ACGH7X_21720) - 4744471..4745325 (+) 855 WP_399887062.1 sugar phosphate isomerase/epimerase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49826.84 Da        Isoelectric Point: 7.4629

>NTDB_id=954011 ACGH7X_RS21700 WP_399887058.1 4738984..4740393(-) (radA/sms) [Streptomyces sp. BBFR51]
MAARTKSTKERPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTTPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKDRGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPADPGRVPDGMKVLEVADIGEALRVLPRSRRREAPREDEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=954011 ACGH7X_RS21700 WP_399887058.1 4738984..4740393(-) (radA/sms) [Streptomyces sp. BBFR51]
ATGGCTGCCCGTACGAAGTCCACCAAGGAACGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACCACGCCGGGGC
GGGTGACCACCTCCGCGCTGCCCATCGGGCAGGTCGACGGGCGGCAGGCGACCGCTCGCTCCACCGGGGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCCGGCGCCGTGGTGCTCGTCGCGGGCGAGCCCGGTGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCCAAGTCCGCGAGCGACGAGCACCGGACTCTCTACGTCACCGGTGAGGAGTCGGCCAGCCAGG
TGCGGCTGCGGGCCGACCGGATCCACGCCATCGACGACCACCTGTACCTCGCCGCCGAGACCGACCTCGCGGCGGTCCTG
GGGCACCTGGACGCCGTGAAGCCGTCGCTGCTGATCCTCGACTCCGTGCAGACCGTGGCCTCGCCCGAGATCGACGGCGC
ACCCGGCGGCATGGCGCAGGTGCGGGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGACCGCGGCATGTCCACGCTGC
TGGTGGGCCATGTCACGAAGGACGGCGCCATCGCGGGTCCGCGGCTGCTGGAGCACCTCGTGGACGTCGTGCTGAGTTTC
GAGGGCGACCGGCACGCGCGGCTGAGGCTGGTGCGGGGCGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACGGGCCTGACCGACCCCAGCGGGCTGTTCCTCACCCGGCGTGCCGAACCCGTGCCCG
GTACCTGTCTGACCGTCACCCTGGAAGGCCGCCGGCCGCTCGTGGCCGAGGTGCAGGCGCTGACCGTCGACTCCCAGATT
CCGTCCCCGCGGCGCACCACGTCCGGTCTGGAGACGTCCCGGGTGTCCATGATGCTGGCCGTGCTGGAGCAGCGCGGTCG
GATCAGCGCGCTGGGCAAGAGGGACATCTACAGTGCGACGGTGGGCGGGGTGAAGCTGTCCGAGCCCGCCGCGGACCTCG
CCGTCGCGCTCGCGCTGGCCAGTGCGGCGAGCGACACCCCGTTGCCCAAGAACCTCGTCGCGATCGGTGAGGTCGGCCTC
GCCGGTGAGGTGAGACGGGTCACGGGCGTGCAGCGCAGGCTCTCCGAGGCGCACCGCCTGGGCTTCACGCATGCCCTGGT
ACCGGCCGATCCGGGCAGGGTCCCTGACGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGAGGCCCTGCGGGTGCTTC
CGCGCTCGCGTCGGCGAGAGGCCCCGCGGGAGGACGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus mitis NCTC 12261

43.142

96.375

0.416
  radA Streptococcus mitis SK321

43.43

95.736

0.416
  radA Streptococcus pneumoniae Rx1

43.207

95.736

0.414
  radA Streptococcus pneumoniae TIGR4

43.207

95.736

0.414
  radA Streptococcus pneumoniae D39

43.207

95.736

0.414
  radA Streptococcus pneumoniae R6

43.207

95.736

0.414