Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACGH7X_RS12585 Genome accession   NZ_CP172448
Coordinates   2753962..2755890 (+) Length   642 a.a.
NCBI ID   WP_399884702.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748962..2760890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH7X_RS12570 (ACGH7X_12570) - 2750260..2750565 (+) 306 WP_217166718.1 YtxH domain-containing protein -
  ACGH7X_RS12575 (ACGH7X_12575) - 2750632..2752086 (+) 1455 WP_399884697.1 FGGY-family carbohydrate kinase -
  ACGH7X_RS12580 (ACGH7X_12580) rcrP 2752229..2753962 (+) 1734 WP_399884699.1 ABC transporter ATP-binding protein Regulator
  ACGH7X_RS12585 (ACGH7X_12585) rcrQ 2753962..2755890 (+) 1929 WP_399884702.1 ABC transporter ATP-binding protein Regulator
  ACGH7X_RS12590 (ACGH7X_12590) - 2756013..2757277 (-) 1265 Protein_2497 RNA polymerase sigma factor -
  ACGH7X_RS12595 (ACGH7X_12595) dnaG 2757398..2759332 (-) 1935 WP_399884704.1 DNA primase -
  ACGH7X_RS12600 (ACGH7X_12600) - 2759380..2760645 (-) 1266 WP_399884706.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69537.92 Da        Isoelectric Point: 5.5828

>NTDB_id=953988 ACGH7X_RS12585 WP_399884702.1 2753962..2755890(+) (rcrQ) [Streptomyces sp. BBFR51]
MAGPAGRMMAGAGPDQRSMDFKGSTKRLLAQFRPERATLFTLLACVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDSMRERGDGNVADMLRSTDFTPGQGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNMGQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGARPEDLLGRVELE
HVSFRYDPQKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHSELLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=953988 ACGH7X_RS12585 WP_399884702.1 2753962..2755890(+) (rcrQ) [Streptomyces sp. BBFR51]
ATGGCGGGTCCTGCGGGGCGGATGATGGCCGGGGCGGGACCCGACCAGCGTTCGATGGACTTCAAGGGGTCGACCAAACG
GCTCCTGGCGCAGTTCCGGCCGGAACGGGCGACCCTGTTCACGCTGCTGGCGTGCGTCGTCGTCAGCGTCGGCCTCAACG
TGGTCGGACCGAAGATCCTGGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCTTCGGGGGCC
ACGAAGGAGCAGGTCCTGGACTCCATGCGGGAGCGCGGCGACGGCAATGTCGCCGACATGCTCCGCAGCACGGACTTCAC
CCCGGGCCAGGGCATCGACTTCGGTGCGGTCGGCGAGGTGCTGCTGCTGGCGCTGGCCACGTTCGCGGTGGCGGGACTCC
TCATGGCGGTGGCCACGCGGCTGGTGAACCGGGCGGTCAACCGGACGATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCCCGGGCGACCAACGACATCGACAA
CATGGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTCGCCATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGGTGACCGTGCCGCTGTCGTTCGTGGTGGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCCCTGTACGAGGCGG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTCCTCGTCGCC
GTGGTGGGCGGCCTGCGGGTGGCCTCGGGCACCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCGTCGGCGGAGCGGATCTTCGAAC
TGCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGCGCCCGGCCGGAGGACCTGCTCGGGCGGGTGGAGCTGGAG
CACGTGTCGTTCCGCTACGACCCTCAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGTCACACGGTCGC
GATCGTCGGTCCGACGGGGGCGGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGGCGGA
TCACCCTGGACGGCGTCGACATAGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCCCGGAAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTACGGACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACGTCGTCCGTGGACACGCGGACCGAGGTGCTCATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACTCGGAGCTGCTGGCTGCCGATGGTGCTTACGCGCGGTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.055

97.04

0.408