Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACGH7X_RS04420 Genome accession   NZ_CP172448
Coordinates   959040..960062 (+) Length   340 a.a.
NCBI ID   WP_399881822.1    Uniprot ID   -
Organism   Streptomyces sp. BBFR51     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 954040..965062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGH7X_RS04405 (ACGH7X_04405) - 955815..956633 (-) 819 WP_399881816.1 carbohydrate ABC transporter permease -
  ACGH7X_RS04410 (ACGH7X_04410) - 956630..957586 (-) 957 WP_399881818.1 carbohydrate ABC transporter permease -
  ACGH7X_RS04415 (ACGH7X_04415) - 957597..958901 (-) 1305 WP_399881820.1 ABC transporter substrate-binding protein -
  ACGH7X_RS04420 (ACGH7X_04420) cytR 959040..960062 (+) 1023 WP_399881822.1 LacI family DNA-binding transcriptional regulator Regulator
  ACGH7X_RS04425 (ACGH7X_04425) - 960071..960502 (-) 432 WP_399881824.1 tautomerase family protein -
  ACGH7X_RS04430 (ACGH7X_04430) - 960574..961491 (+) 918 WP_399881826.1 LysR family transcriptional regulator -
  ACGH7X_RS04435 (ACGH7X_04435) - 961498..961869 (-) 372 WP_399881828.1 VOC family protein -
  ACGH7X_RS04440 (ACGH7X_04440) - 961949..962410 (+) 462 WP_399881830.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACGH7X_RS04445 (ACGH7X_04445) - 962482..963072 (+) 591 WP_399881832.1 TetR/AcrR family transcriptional regulator -
  ACGH7X_RS04450 (ACGH7X_04450) - 963089..964111 (-) 1023 WP_399881834.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36881.98 Da        Isoelectric Point: 6.6406

>NTDB_id=953969 ACGH7X_RS04420 WP_399881822.1 959040..960062(+) (cytR) [Streptomyces sp. BBFR51]
MHDEVEVGARVTLAEVAKEAGVSPPTVSKVLNGRSDVSSSTRARVERLLEVNGYRRRNPSPPRSPLVELVFHELDSVWAM
ELVRGVENVAKANRTDVVLTRSGTRHAPAADWIEGVLRRRPLGVVLVFSSLPAEVKQRLRAWDIPFVIVDPAGDPDPDVP
SVGSANWAGGLAATRHLTDHGHERVAIITGFEDMLCSLARLDGYRSAMTMAGLPIDPALVRYGDYHVQSGFEHGMDLLAG
PDRPTAIFAGSDLHALGVLEAARLRGLRVPEDLSVVGYDDVPLAQWSSPPLTTVHQPLRHMAEEATRMLLRPDDPGRAGR
RIELATHLVVRQSTAPPGGA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=953969 ACGH7X_RS04420 WP_399881822.1 959040..960062(+) (cytR) [Streptomyces sp. BBFR51]
ATGCACGATGAAGTTGAGGTGGGAGCGAGGGTGACCCTGGCCGAGGTGGCGAAAGAGGCCGGGGTCTCCCCTCCGACAGT
TTCGAAGGTGCTCAACGGTCGTTCGGATGTCTCCAGCTCCACCCGGGCCAGGGTGGAGCGGCTTCTGGAGGTGAACGGCT
ACCGCCGCCGGAACCCGAGCCCGCCGCGCTCGCCGCTGGTCGAACTCGTCTTCCACGAGCTGGACAGCGTCTGGGCGATG
GAACTCGTCCGGGGCGTGGAGAACGTCGCCAAGGCCAACCGGACCGACGTGGTGCTGACCCGCAGCGGCACCCGGCACGC
GCCCGCGGCGGACTGGATCGAGGGGGTGCTGCGGCGCCGGCCGCTGGGTGTCGTGCTGGTCTTCTCGTCACTCCCGGCCG
AGGTGAAGCAGCGCCTGCGGGCCTGGGACATCCCCTTCGTCATCGTCGACCCGGCCGGCGACCCCGACCCCGACGTCCCG
TCCGTGGGCTCCGCCAACTGGGCCGGGGGGCTCGCGGCCACGCGTCATCTCACCGACCACGGACACGAACGCGTCGCGAT
CATCACCGGGTTCGAGGACATGCTGTGCTCACTGGCCCGTCTCGACGGCTACCGCTCGGCGATGACCATGGCGGGGCTGC
CGATCGACCCGGCCCTGGTCCGCTACGGCGACTACCACGTGCAGAGCGGCTTCGAGCACGGCATGGACCTGCTCGCCGGT
CCCGACCGGCCGACGGCGATCTTCGCGGGCAGCGACCTCCACGCACTCGGCGTGCTGGAGGCGGCCCGGCTCAGGGGCCT
GCGGGTGCCCGAGGACCTCTCGGTCGTCGGCTACGACGACGTACCGCTGGCCCAGTGGTCGAGCCCTCCGCTGACCACCG
TTCACCAGCCGCTGCGGCACATGGCCGAGGAGGCCACCCGCATGCTCCTGCGCCCCGACGATCCCGGCCGGGCCGGCCGG
CGCATCGAACTGGCGACCCACCTCGTCGTACGCCAGAGCACGGCGCCACCGGGCGGCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-55)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.499

99.118

0.362